Lipson David A, Schmidt Steven K
Department of Biology, San Diego State University, San Diego, California 92182-4614, USA.
Appl Environ Microbiol. 2004 May;70(5):2867-79. doi: 10.1128/AEM.70.5.2867-2879.2004.
The period when the snowpack melts in late spring is a dynamic time for alpine ecosystems. The large winter microbial community begins to turn over rapidly, releasing nutrients to plants. Past studies have shown that the soil microbial community in alpine dry meadows of the Colorado Rocky Mountains changes in biomass, function, broad-level structure, and fungal diversity between winter and early summer. However, little specific information exists on the diversity of the alpine bacterial community or how it changes during this ecologically important period. We constructed clone libraries of 16S ribosomal DNA from alpine soil collected in winter, spring, and summer. We also cultivated bacteria from the alpine soil and measured the seasonal abundance of selected cultured isolates in hybridization experiments. The uncultured bacterial communities changed between seasons in diversity and abundance within taxa. The Acidobacterium division was most abundant in the spring. The winter community had the highest proportion of Actinobacteria and members of the Cytophaga/Flexibacter/Bacteroides (CFB) division. The summer community had the highest proportion of the Verrucomicrobium division and of beta-PROTEOBACTERIA: As a whole, alpha-Proteobacteria were equally abundant in all seasons, although seasonal changes may have occurred within this group. A number of sequences from currently uncultivated divisions were found, including two novel candidate divisions. The cultured isolates belonged to the alpha-, beta-, and gamma-Proteobacteria, the Actinobacteria, and the CFB groups. The only uncultured sequences that were closely related to the isolates were from winter and spring libraries. Hybridization experiments showed that actinobacterial and beta-proteobacterial isolates were most abundant during winter, while the alpha- and gamma-proteobacterial isolates tested did not vary significantly. While the cultures and clone libraries produced generally distinct groups of organisms, the two approaches gave consistent accounts of seasonal changes in microbial diversity.
晚春时节积雪融化的这段时期,对于高山生态系统来说是一个充满活力的阶段。庞大的冬季微生物群落开始迅速更替,向植物释放养分。过去的研究表明,科罗拉多落基山脉高山干旱草甸的土壤微生物群落在冬季和初夏之间,在生物量、功能、总体结构和真菌多样性方面会发生变化。然而,关于高山细菌群落的多样性或其在这个生态重要时期如何变化,具体信息却很少。我们构建了来自冬季、春季和夏季采集的高山土壤的16S核糖体DNA克隆文库。我们还从高山土壤中培养细菌,并在杂交实验中测量了选定培养分离株的季节性丰度。未培养的细菌群落在分类群内的多样性和丰度随季节而变化。酸杆菌门在春季最为丰富。冬季群落中放线菌以及噬纤维菌/屈挠杆菌/拟杆菌(CFB)门成员的比例最高。夏季群落中疣微菌门以及β-变形菌纲的比例最高。总体而言,α-变形菌纲在所有季节中的丰度相同,尽管该类群内部可能发生了季节性变化。发现了一些来自目前未培养类群的序列,包括两个新的候选类群。培养的分离株属于α-、β-和γ-变形菌纲、放线菌以及CFB类群。与分离株密切相关的唯一未培养序列来自冬季和春季文库。杂交实验表明,放线菌和β-变形菌分离株在冬季最为丰富,而测试的α-和γ-变形菌分离株没有显著变化。虽然培养物和克隆文库产生了一般不同的生物群体,但这两种方法对微生物多样性的季节性变化给出了一致的描述。