Huang Jingwei, Lipscomb William N
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Biochemistry. 2004 Jun 1;43(21):6422-6. doi: 10.1021/bi0302144.
The structure of aspartate transcarbamylase of Escherichia coli ligated to products (phosphate and N-carbamyl-l-aspartate) has been determined at 2.37 A resolution (R-factor = 0.23, R(free) = 0.27). Results might indicate a product release mode, rather than close analogues to the transition state like those found in our earlier studies of other ligands (N-phosphonacetyl-L-aspartate, carbamyl phosphate plus malonate, phosphonoacetamide plus malonate, or citrate plus phosphate). Ordered product release, first carbamylaspartate (CLA) and then phosphate, might be facilitated by a 4 A movement of phosphate from the substrate-analogue position to the product (phosphate) binding position, and by a somewhat similar release movement of the other product (CLA) relative to its analogue (citrate). This movement is consistent with earlier studies of binding of either pyrophosphate or phosphate alone [Honzatko, R. B., and Lipscomb, W. N. (1982) J. Mol. Biol. 160, 265-286].
已在2.37埃分辨率下(R因子 = 0.23,R(自由)= 0.27)测定了与产物(磷酸盐和N - 氨甲酰 - L - 天冬氨酸)连接的大肠杆菌天冬氨酸转氨甲酰酶的结构。结果可能表明一种产物释放模式,而不是像我们早期对其他配体(N - 膦酰乙酰 - L - 天冬氨酸、氨甲酰磷酸加丙二酸、膦酰乙酰胺加丙二酸或柠檬酸盐加磷酸盐)的研究中发现的那样与过渡态紧密类似。有序的产物释放,先是氨甲酰天冬氨酸(CLA)然后是磷酸盐,可能通过磷酸盐从底物类似物位置向产物(磷酸盐)结合位置移动4埃以及另一种产物(CLA)相对于其类似物(柠檬酸盐)的类似释放移动来促进。这种移动与早期单独对焦磷酸盐或磷酸盐结合的研究一致[洪扎特科,R. B.,和利普斯科姆,W. N.(1982年)《分子生物学杂志》160,265 - 286]。