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天冬氨酸转氨甲酰酶 R 态产物释放途径。

The pathway of product release from the R state of aspartate transcarbamoylase.

机构信息

Department of Chemistry, Boston College, Merkert Chemistry Center, Chestnut Hill, MA 02467-3807, USA.

出版信息

J Mol Biol. 2010 Sep 3;401(5):940-8. doi: 10.1016/j.jmb.2010.07.003. Epub 2010 Jul 8.

Abstract

The pathway of product release from the R state of aspartate transcarbamoylase (ATCase; EC 2.1.3.2, aspartate carbamoyltransferase) has been determined here by solving the crystal structure of Escherichia coli ATCase locked in the R quaternary structure by specific introduction of disulfide bonds. ATCase displays ordered substrate binding and product release, remaining in the R state until substrates are exhausted. The structure reported here represents ATCase in the R state bound to the final product molecule, phosphate. This structure has been difficult to obtain previously because the enzyme relaxes back to the T state after the substrates are exhausted. Hence, cocrystallizing the wild-type enzyme with phosphate results in a T-state structure. In this structure of the enzyme trapped in the R state with specific disulfide bonds, we observe two phosphate molecules per active site. The position of the first phosphate corresponds to the position of the phosphate of carbamoyl phosphate (CP) and the position of the phosphonate of N-phosphonacetyl-l-aspartate. However, the second, more weakly bound phosphate is bound in a positively charged pocket that is more accessible to the surface than the other phosphate. The second phosphate appears to be on the path that phosphate would have to take to exit the active site. Our results suggest that phosphate dissociation and CP binding can occur simultaneously and that the dissociation of phosphate may actually promote the binding of CP for more efficient catalysis.

摘要

本文通过特定引入二硫键,将大肠杆菌天冬氨酸转氨甲酰酶(ATCase;EC 2.1.3.2,天冬氨酸carbamoyltransferase)锁定在 R 四聚体结构中,确定了其产物从 R 状态释放的途径。ATCase 显示出有序的底物结合和产物释放,在耗尽底物之前一直保持在 R 状态。这里报道的结构代表了与最终产物分子磷酸盐结合的 R 状态下的 ATCase。由于酶在耗尽底物后会松弛回 T 状态,因此之前很难获得这种结构。因此,野生型酶与磷酸盐共结晶会产生 T 态结构。在这种通过特定二硫键固定在 R 态的酶结构中,我们观察到每个活性位点有两个磷酸盐分子。第一个磷酸盐的位置对应于氨甲酰磷酸(CP)的磷酸盐位置和 N-膦酰乙酰-l-天冬氨酸的磷酸位置。然而,第二个结合较弱的磷酸盐结合在一个正电荷口袋中,该口袋比其他磷酸盐更容易接近表面。第二个磷酸盐似乎处于磷酸盐离开活性位点必须经过的路径上。我们的结果表明,磷酸盐的解离和 CP 的结合可以同时发生,并且磷酸盐的解离实际上可能促进 CP 的结合,以实现更有效的催化。

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