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使用与镧系离子配位的化学标签对溶液中蛋白质进行弱对齐的新技术。

Novel techniques for weak alignment of proteins in solution using chemical tags coordinating lanthanide ions.

作者信息

Ikegami Takahisa, Verdier Laurent, Sakhaii Peyman, Grimme Susanne, Pescatore Barbara, Saxena Krishna, Fiebig Klaus M, Griesinger Christian

机构信息

Max-Planck Institute for Biophysical Chemistry, Department of NMR Based Structural Biology, University of Frankfurt am Fassberg 11, D-37077 Göttingen, Germany.

出版信息

J Biomol NMR. 2004 Jul;29(3):339-49. doi: 10.1023/B:JNMR.0000032611.72827.de.

DOI:10.1023/B:JNMR.0000032611.72827.de
PMID:15213432
Abstract

A molecule with an anisotropic magnetic susceptibility is spontaneously aligned in a static magnetic field. Alignment of such a molecule yields residual dipolar couplings and pseudocontact shifts. Lanthanide ions have recently been successfully used to provide an anisotropic magnetic susceptibility in target molecules either by replacing a calcium ion with a lanthanide ion in calcium-binding proteins or by attaching an EDTA derivative to a cysteine residue via a disulfide bond. Here we describe a novel enantiomerically pure EDTA derived tag that aligns stronger due to its shorter linker and does not suffer from stereochemical diversity upon lanthanide complexation. We observed residual (15)N,(1)H-dipolar couplings of up to 8 Hz at 800 MHz induced by a single alignment tensor from this tag.

摘要

具有各向异性磁化率的分子会在静磁场中自发排列。这种分子的排列会产生剩余偶极耦合和赝接触位移。最近,镧系离子已成功用于在目标分子中提供各向异性磁化率,方法是在钙结合蛋白中用镧系离子取代钙离子,或者通过二硫键将EDTA衍生物连接到半胱氨酸残基上。在此,我们描述了一种新型对映体纯的EDTA衍生标签,由于其连接子较短,排列更强,并且在镧系络合时不会受到立体化学多样性的影响。我们观察到,由该标签的单个排列张量在800 MHz时诱导产生的高达8 Hz的剩余(15)N,(1)H - 偶极耦合。

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本文引用的文献

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Protein alignment by a coexpressed lanthanide-binding tag for the measurement of residual dipolar couplings.通过共表达镧系元素结合标签进行蛋白质比对以测量剩余偶极耦合。
J Am Chem Soc. 2003 Nov 5;125(44):13338-9. doi: 10.1021/ja036022d.
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De novo determination of bond orientations and order parameters from residual dipolar couplings with high accuracy.通过剩余偶极耦合高精度地从头确定键的取向和序参量。
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Dipolar couplings in multiple alignments suggest alpha helical motion in ubiquitin.
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Lanthanoid tagging via an unnatural amino acid for protein structure characterization.通过非天然氨基酸进行镧系元素标记以表征蛋白质结构
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Paramagnetic Ligand Tagging To Identify Protein Binding Sites.顺磁配体标记以识别蛋白质结合位点。
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Visualizing transient dark states by NMR spectroscopy.通过核磁共振光谱法可视化瞬态暗态。
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Multiple paramagnetic effects through a tagged reporter protein.通过标记报告蛋白产生的多种顺磁效应。
Angew Chem Int Ed Engl. 2015 Jan 2;54(1):336-9. doi: 10.1002/anie.201408615. Epub 2014 Oct 7.
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J Magn Reson. 2014 Apr;241:32-40. doi: 10.1016/j.jmr.2013.12.012.
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4
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Breaking symmetry in the structure determination of (large) symmetric protein dimers.(大型)对称蛋白质二聚体结构测定中的对称性破缺
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