Blundell Charles D, DeAngelis Paul L, Day Anthony J, Almond Andrew
Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1, 3QU, UK.
Glycobiology. 2004 Nov;14(11):999-1009. doi: 10.1093/glycob/cwh117. Epub 2004 Jun 23.
The glycosaminoglycan hyaluronan is a vital structural component of extracellular matrices with diverse biological functions, a molecular understanding of which requires a detailed description of secondary and tertiary solution structures. Various models of these structures have been proposed on the basis of 1H and 13C natural-abundance nuclear magnetic resonance (NMR) experiments, but resonance overlap limits further progress with these techniques. We have therefore produced 15N- and 13C- isotopically-labeled hyaluronan oligosaccharides and applied triple-resonance and 3D experiments to overcome this restriction. Spectra recorded on oligosaccharides (of lengths 4, 6, 8, 10, and 12 sugar rings), reveal that the 15N nucleus allows resolution of the amide groups in a decamer at high magnetic field, whereas 13C natural-abundance NMR can only resolve internal groups up to hexamers. Complete 13N sequence- specific assignments of these oligosaccharides indicate that the chemical shift dispersion can be explained by end-effects, which are seen even in the middle of octamers. Triple- resonance and 15N-edited 3D experiments, among the first of their kind in oligosaccharides, have been used to achieve resolution of ring 1H and 13C nuclei where not possible previously. The subtle chemical shift perturbations resolved suggest that different conformations and dynamics occur at the ends, which may contribute to the range of biological activities displayed by varying lengths of hyaluronan. 15N-NMR in carbohydrates has not received much attention before, however, this study demonstrates it has clear advantages for achieving resolution and assessing dynamic motion. These conclusions are likely to be applicable to the study of the structure and dynamics of other nitrogen-containing carbohydrates.
糖胺聚糖透明质酸是细胞外基质的重要结构成分,具有多种生物学功能,要从分子层面理解其功能,需要详细描述其二级和三级溶液结构。基于1H和13C天然丰度核磁共振(NMR)实验,已经提出了这些结构的各种模型,但共振重叠限制了这些技术的进一步发展。因此,我们制备了15N和13C同位素标记的透明质酸寡糖,并应用三共振和3D实验来克服这一限制。在不同长度(4、6、8、10和12个糖环)的寡糖上记录的光谱表明,15N原子核在高磁场下能够分辨十聚体中的酰胺基团,而13C天然丰度NMR只能分辨六聚体以内的内部基团。这些寡糖完整的13N序列特异性归属表明,化学位移分散可以用末端效应来解释,即使在八聚体中间也能观察到这种效应。三共振和15N编辑的3D实验是寡糖领域首次使用此类实验,用于在以前无法实现的情况下分辨环上的1H和13C原子核。分辨出的细微化学位移扰动表明,末端存在不同的构象和动力学,这可能有助于解释不同长度的透明质酸所表现出的一系列生物活性。此前,碳水化合物中的15N-NMR并未受到太多关注,然而,本研究表明它在实现分辨率和评估动态运动方面具有明显优势。这些结论可能适用于其他含氮碳水化合物的结构和动力学研究。