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通过三维魔角旋转核磁共振光谱法测定均匀 15N、13C 标记的微晶蛋白中 15N 化学位移各向异性的大小。

Determinations of 15N chemical shift anisotropy magnitudes in a uniformly 15N,13C-labeled microcrystalline protein by three-dimensional magic-angle spinning nuclear magnetic resonance spectroscopy.

作者信息

Wylie Benjamin J, Franks W Trent, Rienstra Chad M

机构信息

Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, USA.

出版信息

J Phys Chem B. 2006 Jun 8;110(22):10926-36. doi: 10.1021/jp060507h.

Abstract

Amide 15N chemical shift anisotropy (CSA) tensors provide quantitative insight into protein structure and dynamics. Experimental determinations of 15N CSA tensors in biologically relevant molecules have typically been performed by NMR relaxation studies in solution, goniometric analysis of single-crystal spectra, or slow magic-angle spinning (MAS) NMR experiments of microcrystalline samples. Here we present measurements of 15N CSA tensor magnitudes in a protein of known structure by three-dimensional MAS solid-state NMR. Isotropic 15N, 13C alpha, and 13C' chemical shifts in two dimensions resolve site-specific backbone amide recoupled CSA line shapes in the third dimension. Application of the experiments to the 56-residue beta1 immunoglobulin binding domain of protein G (GB1) enabled 91 independent determinations of 15N tensors at 51 of the 55 backbone amide sites, for which 15N-13C alpha and/or 15N-13C' cross-peaks were resolved in the two-dimensional experiment. For 37 15N signals, both intra- and interresidue correlations were resolved, enabling direct comparison of two experimental data sets to enhance measurement precision. Systematic variations between beta-sheet and alpha-helix residues are observed; the average value for the anisotropy parameter, delta (delta = delta(zz) - delta(iso)), for alpha-helical residues is 6 ppm greater than that for the beta-sheet residues. The results show a variation in delta of 15N amide backbone sites between -77 and -115 ppm, with an average value of -103.5 ppm. Some sites (e.g., G41) display smaller anisotropy due to backbone dynamics. In contrast, we observe an unusually large 15N tensor for K50, a residue that has an atypical, positive value for the backbone phi torsion angle. To our knowledge, this is the most complete experimental analysis of 15N CSA magnitude to date in a solid protein. The availability of previous high-resolution crystal and solution NMR structures, as well as detailed solid-state NMR studies, will enhance the value of these measurements as a benchmark for the development of ab initio calculations of amide 15N shielding tensor magnitudes.

摘要

酰胺氮-15化学位移各向异性(CSA)张量能为蛋白质结构和动力学提供定量的见解。在生物相关分子中,氮-15 CSA张量的实验测定通常通过溶液中的核磁共振弛豫研究、单晶谱的测角分析或微晶样品的慢速魔角旋转(MAS)核磁共振实验来进行。在此,我们通过三维MAS固态核磁共振展示了对已知结构蛋白质中氮-15 CSA张量大小的测量。二维中的各向同性氮-15、碳-13α和碳-13′化学位移在第三维中解析出位点特异性的主链酰胺再耦合CSA线形。将这些实验应用于蛋白G(GB1)的56个残基的β1免疫球蛋白结合结构域,能够在55个主链酰胺位点中的51个位点对氮-15张量进行91次独立测定,在二维实验中解析出了这些位点的氮-15 - 碳-13α和/或氮-15 - 碳-13′交叉峰。对于37个氮-15信号,解析出了残基内和残基间的相关性,从而能够直接比较两个实验数据集以提高测量精度。观察到β折叠和α螺旋残基之间存在系统性差异;α螺旋残基的各向异性参数δ(δ = δ(zz) - δ(iso))的平均值比β折叠残基的大6 ppm。结果表明,氮-15酰胺主链位点的δ值在-77至-115 ppm之间变化,平均值为-103.5 ppm。一些位点(如G41)由于主链动力学表现出较小的各向异性。相比之下,我们观察到K50的氮-15张量异常大,该残基的主链φ扭转角具有非典型的正值。据我们所知,这是迄今为止对固态蛋白质中氮-15 CSA大小最完整的实验分析。先前高分辨率晶体和溶液核磁共振结构的可得性,以及详细的固态核磁共振研究,将提高这些测量作为酰胺氮-15屏蔽张量大小从头计算发展基准的价值。

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