预测蛋白质服务器。
The PredictProtein server.
作者信息
Rost Burkhard, Yachdav Guy, Liu Jinfeng
机构信息
CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA.
出版信息
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W321-6. doi: 10.1093/nar/gkh377.
Abstract
PredictProtein (http://www.predictprotein.org) is an Internet service for sequence analysis and the prediction of protein structure and function. Users submit protein sequences or alignments; PredictProtein returns multiple sequence alignments, PROSITE sequence motifs, low-complexity regions (SEG), nuclear localization signals, regions lacking regular structure (NORS) and predictions of secondary structure, solvent accessibility, globular regions, transmembrane helices, coiled-coil regions, structural switch regions, disulfide-bonds, sub-cellular localization and functional annotations. Upon request fold recognition by prediction-based threading, CHOP domain assignments, predictions of transmembrane strands and inter-residue contacts are also available. For all services, users can submit their query either by electronic mail or interactively via the World Wide Web.
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本文引用的文献
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Improving fold recognition without folds.在无折叠信息的情况下改进折叠识别。
J Mol Biol. 2004 Jul 30;341(1):255-69. doi: 10.1016/j.jmb.2004.05.041.
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Annotating proteins from endoplasmic reticulum and Golgi apparatus in eukaryotic proteomes.对真核生物蛋白质组中来自内质网和高尔基体的蛋白质进行注释。
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Cataloging proteins in cell cycle control.细胞周期调控中的蛋白质编目。
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4
The Pfam protein families database.Pfam蛋白质家族数据库。
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D138-41. doi: 10.1093/nar/gkh121.
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Better prediction of sub-cellular localization by combining evolutionary and structural information.通过结合进化信息和结构信息更好地预测亚细胞定位。
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NORSp: Predictions of long regions without regular secondary structure.NORSp：预测无规则二级结构的长区域。
Nucleic Acids Res. 2003 Jul 1;31(13):3833-5. doi: 10.1093/nar/gkg515.
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LOC3D: annotate sub-cellular localization for protein structures.LOC3D：注释蛋白质结构的亚细胞定位。
Nucleic Acids Res. 2003 Jul 1;31(13):3337-40. doi: 10.1093/nar/gkg514.
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EVA: Evaluation of protein structure prediction servers.EVA：蛋白质结构预测服务器评估
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Domains, motifs and clusters in the protein universe.蛋白质世界中的结构域、基序和簇。
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