预测蛋白质服务器。
The PredictProtein server.
作者信息
Rost Burkhard, Liu Jinfeng
机构信息
CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA.
出版信息
Nucleic Acids Res. 2003 Jul 1;31(13):3300-4. doi: 10.1093/nar/gkg508.
Abstract
PredictProtein (PP, http://cubic.bioc.columbia.edu/pp/) is an internet service for sequence analysis and the prediction of aspects of protein structure and function. Users submit protein sequence or alignments; the server returns a multiple sequence alignment, PROSITE sequence motifs, low-complexity regions (SEG), ProDom domain assignments, nuclear localisation signals, regions lacking regular structure and predictions of secondary structure, solvent accessibility, globular regions, transmembrane helices, coiled-coil regions, structural switch regions and disulfide-bonds. Upon request, fold recognition by prediction-based threading is available. For all services, users can submit their query either by electronic mail or interactively from World Wide Web.
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本文引用的文献
1
NORSp: Predictions of long regions without regular secondary structure.NORSp：预测无规则二级结构的长区域。
Nucleic Acids Res. 2003 Jul 1;31(13):3833-5. doi: 10.1093/nar/gkg515.
2
EVA: Evaluation of protein structure prediction servers.EVA：蛋白质结构预测服务器评估
Nucleic Acids Res. 2003 Jul 1;31(13):3311-5. doi: 10.1093/nar/gkg619.
3
Domains, motifs and clusters in the protein universe.蛋白质世界中的结构域、基序和簇。
Curr Opin Chem Biol. 2003 Feb;7(1):5-11. doi: 10.1016/s1367-5931(02)00003-0.
4
NLSdb: database of nuclear localization signals.NLSdb：核定位信号数据库。
Nucleic Acids Res. 2003 Jan 1;31(1):397-9. doi: 10.1093/nar/gkg001.
5
Sequence conserved for subcellular localization.亚细胞定位的序列保守区。
Protein Sci. 2002 Dec;11(12):2836-47. doi: 10.1110/ps.0207402.
6
Transmembrane helix predictions revisited.跨膜螺旋预测再探讨。
Protein Sci. 2002 Dec;11(12):2774-91. doi: 10.1110/ps.0214502.
7
Loopy proteins appear conserved in evolution.环状蛋白在进化过程中似乎是保守的。
J Mol Biol. 2002 Sep 6;322(1):53-64. doi: 10.1016/s0022-2836(02)00736-2.
8
Enzyme function less conserved than anticipated.酶功能的保守性低于预期。
J Mol Biol. 2002 Apr 26;318(2):595-608. doi: 10.1016/S0022-2836(02)00016-5.
9
Alignments grow, secondary structure prediction improves.比对结果不断增加，二级结构预测得到改善。
Proteins. 2002 Feb 1;46(2):197-205. doi: 10.1002/prot.10029.
10
Review: protein secondary structure prediction continues to rise.综述：蛋白质二级结构预测持续发展。
J Struct Biol. 2001 May-Jun;134(2-3):204-18. doi: 10.1006/jsbi.2001.4336.
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