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钼羟化酶喹啉2-氧化还原酶的活性位点几何结构与底物识别

Active site geometry and substrate recognition of the molybdenum hydroxylase quinoline 2-oxidoreductase.

作者信息

Bonin Irena, Martins Berta M, Purvanov Vladimir, Fetzner Susanne, Huber Robert, Dobbek Holger

机构信息

Abteilung für Strukturforschung, Max-Planck-Institut für Biochemie, 82152 Martinsried, Germany.

出版信息

Structure. 2004 Aug;12(8):1425-35. doi: 10.1016/j.str.2004.05.014.

Abstract

The soil bacterium Pseudomonas putida 86 uses quinoline as a sole source of carbon and energy. Quinoline 2-oxidoreductase (Qor) catalyzes the first metabolic step converting quinoline to 2-oxo-1,2-dihydroquinoline. Qor is a member of the molybdenum hydroxylases. The molybdenum ion is coordinated by two ene-dithiolate sulfur atoms, two oxo-ligands, and a catalytically crucial sulfido-ligand, whose position in the active site was controversial. The 1.8 A resolution crystal structure of Qor indicates that the sulfido-ligand occupies the equatorial position at the molybdenum ion. The structural comparison of Qor with the allopurinol-inhibited xanthine dehydrogenase from Rhodobacter capsulatus allows direct insight into the mechanism of substrate recognition and the identification of putative catalytic residues. The active site protein variants QorE743V and QorE743D were analyzed to assess the catalytic role of E743.

摘要

土壤细菌恶臭假单胞菌86以喹啉作为唯一的碳源和能源。喹啉2-氧化还原酶(Qor)催化将喹啉转化为2-氧代-1,2-二氢喹啉的第一步代谢反应。Qor是钼羟化酶家族的一员。钼离子由两个烯二硫醇硫原子、两个氧代配体和一个对催化至关重要的硫代配体配位,其在活性位点中的位置存在争议。Qor的1.8埃分辨率晶体结构表明,硫代配体占据钼离子的赤道位置。将Qor与来自荚膜红细菌的别嘌呤醇抑制的黄嘌呤脱氢酶进行结构比较,可以直接深入了解底物识别机制并鉴定推定的催化残基。分析了活性位点蛋白变体QorE743V和QorE743D,以评估E743的催化作用。

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