Alcaraz Antonio, Nestorovich Ekaterina M, Aguilella-Arzo Marcel, Aguilella Vicente M, Bezrukov Sergey M
Departamento de Ciencias Experimentales, Universidad Jaume I, Castellón, Spain.
Biophys J. 2004 Aug;87(2):943-57. doi: 10.1529/biophysj.104/043414.
Although the crystallographic structure of the bacterial porin OmpF has been known for a decade, the physical mechanisms of its ionic selectivity are still under investigation. We address this issue in a series of experiments with varied pH, salt concentrations, inverted salt gradient, and charged and uncharged lipids. Measuring reversal potential, we show that OmpF selectivity (traditionally regarded as slightly cationic) depends strongly on pH and salt concentration and is conditionally asymmetric, that is, the calculated selectivity is sensitive to the direction of salt concentration gradient. At neutral pH and subdecimolar salt concentrations the channel exhibits nearly ideal cation selectivity (t(G)(+)=0.98+/-0.01). Substituting neutral DPhPC with DPhPS, we demonstrate that the fixed charge of the host lipid has a small but measurable effect on the channel reversal potential. The available structural information allows for a qualitative explanation of our experimental findings. These findings now lead us to re-examine the ionization state of 102 titratable sites of the OmpF channel. Using standard methods of continuum electrostatics tailored to our particular purpose, we find the charge distribution in the channel as a function of solution acidity and relate the pH-dependent asymmetry in channel selectivity to the pH-dependent asymmetry in charge distribution. In an attempt to find a simple phenomenological description of our results, we also discuss different macroscopic models of electrodiffusion through large channels.
尽管细菌孔蛋白OmpF的晶体结构已为人所知达十年之久,但其离子选择性的物理机制仍在研究之中。我们通过一系列实验来探讨这个问题,这些实验涉及不同的pH值、盐浓度、反向盐梯度以及带电和不带电的脂质。通过测量反转电位,我们发现OmpF的选择性(传统上被认为略带阳离子选择性)强烈依赖于pH值和盐浓度,并且具有条件性不对称性,即计算出的选择性对盐浓度梯度的方向敏感。在中性pH值和亚摩尔盐浓度下,该通道表现出近乎理想的阳离子选择性(t(G)(+)=0.98±0.01)。用DPhPS替代中性的DPhPC,我们证明主体脂质的固定电荷对通道反转电位有微小但可测量的影响。现有的结构信息能够对我们的实验结果进行定性解释。这些发现促使我们重新审视OmpF通道102个可滴定位点的电离状态。使用针对我们特定目的定制的连续介质静电学标准方法,我们找到了通道中电荷分布随溶液酸度的变化情况,并将通道选择性中依赖于pH值的不对称性与电荷分布中依赖于pH值的不对称性联系起来。为了找到对我们结果的简单唯象描述,我们还讨论了通过大通道的电扩散的不同宏观模型。