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2.0 与肽抑制剂和去污剂复合的环磷酸腺苷依赖性蛋白激酶催化亚基的精细晶体结构。

2.0 A refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with a peptide inhibitor and detergent.

作者信息

Knighton D R, Bell S M, Zheng J, Ten Eyck L F, Xuong N H, Taylor S S, Sowadski J M

机构信息

Department of Chemistry, University of California, San Diego, La Jolla 92093-0654, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 1993 May 1;49(Pt 3):357-61. doi: 10.1107/S0907444993000502.

Abstract

. A mutant (Serl39Ala) of the mouse recombinant catalytic (C) subunit of cAMP-dependent protein kinase was co-crystallized with a peptide inhibitor, PKI(5-24), and MEGA-8 (octanoyl-N-methylglucamide) detergent. This structure was refined using all observed data (30 248 reflections) between 30 and 1.95 A resolution to an R factor of 0.186. R.m.s. deviations of bond lengths and bond angles are 0.013 A and 2.3 degrees, respectively. The final model has 3075 atoms (207 solvent) with a mean B factor of 31.9 A(2). The placement of invariant protein-kinase residues and most C:PKI(5-24) interactions were confirmed, but register errors affecting residues 55-64 and 309-339 were corrected during refinement by shifting the affected sequences toward the C terminus along the previously determined backbone path. New details of C:PKI(5-24) interactions and the Ser338 autophosphorylation site are described, and the acyl group binding site near the catalytic subunit NH(2) terminus is identified.

摘要

小鼠重组环磷酸腺苷依赖性蛋白激酶催化(C)亚基的一个突变体(Ser139Ala)与一种肽抑制剂PKI(5 - 24)以及MEGA - 8(辛酰 - N - 甲基葡糖酰胺)去污剂共同结晶。利用30至1.95埃分辨率之间的所有观测数据(30248个反射)对该结构进行精修,R因子为0.186。键长和键角的均方根偏差分别为0.013埃和2.3度。最终模型有3075个原子(207个溶剂分子),平均B因子为31.9埃²。确定了不变的蛋白激酶残基的位置以及大多数C:PKI(5 - 24)相互作用,但在精修过程中,通过将受影响的序列沿先前确定的主链路径向C末端移动,纠正了影响残基55 - 64和309 - 339的配准错误。描述了C:PKI(5 - 24)相互作用和Ser338自磷酸化位点的新细节,并确定了催化亚基NH₂末端附近的酰基结合位点。

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