双锯鱼共生绿藻atpBE序列及叶绿体起源推断
Sequence of Prochloron didemni atpBE and the inference of chloroplast origins.
作者信息
Lockhart P J, Beanland T J, Howe C J, Larkum A W
机构信息
School of Biological Sciences, University of Sydney, NSW, Australia.
出版信息
Proc Natl Acad Sci U S A. 1992 Apr 1;89(7):2742-6. doi: 10.1073/pnas.89.7.2742.
Abstract
The prochlorophytes, oxygenic photosynthetic prokaryotes containing chlorophylls a and b, have been put forward as descended from the organisms that gave rise to chloroplasts of green plants and algae by endosymbiosis, although this has always been controversial. To assess the phylogenetic position of the prochlorophyte Prochloron didemni, we have cloned and sequenced its atpBE genes. Phylogenetic inference under a range of models gives moderate to strong support for a cyanobacterial grouping rather than a chloroplast one. Possible systematic errors in this and previous analyses of prochlorophyte sequences are discussed.
摘要
原绿藻是含有叶绿素a和b的产氧光合原核生物，有人提出它们是通过内共生作用从产生绿色植物和藻类叶绿体的生物进化而来的，尽管这一观点一直存在争议。为了评估原绿藻双栖原绿藻的系统发育位置，我们克隆并测序了它的atpBE基因。在一系列模型下进行的系统发育推断为蓝细菌分组提供了中度到有力的支持，而非叶绿体分组。本文讨论了此次以及之前对原绿藻序列分析中可能存在的系统误差。
相似文献
1
Sequence of Prochloron didemni atpBE and the inference of chloroplast origins.双锯鱼共生绿藻atpBE序列及叶绿体起源推断
Proc Natl Acad Sci U S A. 1992 Apr 1;89(7):2742-6. doi: 10.1073/pnas.89.7.2742.
2
Multiple evolutionary origins of prochlorophytes, the chlorophyll b-containing prokaryotes.原绿藻（含叶绿素b的原核生物）的多重进化起源。
Nature. 1992 Jan 16;355(6357):265-7. doi: 10.1038/355265a0.
3
Partial sequence of ribulose-1,5-bisphosphate carboxylase/oxygenase and the phylogeny of Prochloron and Prochlorococcus (Prochlorales).1,5-二磷酸核酮糖羧化酶/加氧酶的部分序列以及原绿藻和原绿球藻（原绿藻目）的系统发育
J Mol Evol. 1995 Jun;40(6):671-7. doi: 10.1007/BF00160516.
4
psbA genes indicate common ancestry of prochlorophytes and chloroplasts.光合系统Ⅱ反应中心蛋白A基因表明原绿藻和叶绿体有着共同的祖先。
Nature. 1989 Jan 26;337(6205):382-5. doi: 10.1038/337382a0.
5
Chlorophyll b and phycobilins in the common ancestor of cyanobacteria and chloroplasts.蓝细菌和叶绿体共同祖先中的叶绿素b和藻胆素。
Nature. 1999 Jul 8;400(6740):159-62. doi: 10.1038/22101.
6
The relationship of a prochlorophyte Prochlorothrix hollandica to green chloroplasts.原绿藻（Prochlorothrix hollandica）与绿色叶绿体的关系。
Nature. 1989 Jan 26;337(6205):380-2. doi: 10.1038/337380a0.
7
The prochlorophytes: are they more than just chlorophyll a/b-containing cyanobacteria?原绿藻：它们仅仅是含有叶绿素a/b的蓝细菌吗？
Crit Rev Microbiol. 1993;19(1):43-59. doi: 10.3109/10408419309113522.
8
Phylogenetic analyses of the homologous transmembrane channel-forming proteins of the F0F1-ATPases of bacteria, chloroplasts and mitochondria.细菌、叶绿体和线粒体的F0F1 - ATP酶同源跨膜通道形成蛋白的系统发育分析。
Microbiology (Reading). 1996 Jan;142 ( Pt 1):17-32. doi: 10.1099/13500872-142-1-17.
9
Glyceraldehyde-3-phosphate dehydrogenase gene diversity in eubacteria and eukaryotes: evidence for intra- and inter-kingdom gene transfer.真细菌和真核生物中3-磷酸甘油醛脱氢酶基因的多样性： kingdom内和 kingdom间基因转移的证据 （注：原文中“kingdom”表述有误，应该是“intra- and inter-kingdom”，这里按照正确理解翻译为“界内和界间” ，即“真细菌界内和真细菌界与真核生物界间”）
正确译文：真细菌界内和真细菌界与真核生物界间3-磷酸甘油醛脱氢酶基因的多样性：界内和界间基因转移的证据
Mol Biol Evol. 1999 Apr;16(4):429-40. doi: 10.1093/oxfordjournals.molbev.a026125.
10
Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation.原绿藻在蓝细菌辐射范围内的多个进化起源。
Nature. 1992 Jan 16;355(6357):267-70. doi: 10.1038/355267a0.
引用本文的文献
1
IsProchlorothrix hollandica the best choice as a prokaryotic model for higher plant Chla/b photosynthesis?拟柱胞藻是否是高等植物 Chla/b 光合作用的最佳原核模式生物？
Photosynth Res. 1993 Jul;37(1):61-8. doi: 10.1007/BF02185439.
2
Prochlorophyta - a matter of class distinctions.原绿藻门——一个分类学问题。
Photosynth Res. 2002;73(1-3):59-61. doi: 10.1023/A:1020400327040.
3
Light-harvesting chlorophyll c-like pigment in Prochloron.原绿藻中捕光叶绿素c类色素。
Proc Natl Acad Sci U S A. 1994 Jan 18;91(2):679-83. doi: 10.1073/pnas.91.2.679.
4
Substitution rate calibration of small subunit ribosomal RNA identifies chlorarachniophyte endosymbionts as remnants of green algae.小亚基核糖体RNA的替代率校准将绿胞藻内共生体鉴定为绿藻的残余物。
Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):7732-6. doi: 10.1073/pnas.93.15.7732.
5
Characterization of a membrane-associated ATPase from Methanococcus voltae, a methanogenic member of the Archaea.来自古细菌产甲烷菌沃氏甲烷球菌的一种膜相关ATP酶的特性分析。
J Bacteriol. 1993 Sep;175(17):5677-82. doi: 10.1128/jb.175.17.5677-5682.1993.
6
Cloning and nucleotide sequence of a cDNA encoding a major fucoxanthin-, chlorophyll a/c-containing protein from the chrysophyte Isochrysis galbana: implications for evolution of the cab gene family.来自金藻等鞭金藻的编码主要岩藻黄质 - 叶绿素a/c结合蛋白的cDNA的克隆及核苷酸序列：对cab基因家族进化的启示
Plant Mol Biol. 1994 Jun;25(3):355-68. doi: 10.1007/BF00043865.
7
Gene structure and expression of a novel Euglena gracilis chloroplast operon encoding cytochrome b6 and the beta and epsilon subunits of the H(+)-ATP synthase complex.一种编码细胞色素b6以及H(+)-ATP合酶复合体β和ε亚基的新型纤细裸藻叶绿体操纵子的基因结构与表达
Curr Genet. 1994 Mar;25(3):270-81. doi: 10.1007/BF00357173.
8
Partial sequence of ribulose-1,5-bisphosphate carboxylase/oxygenase and the phylogeny of Prochloron and Prochlorococcus (Prochlorales).1,5-二磷酸核酮糖羧化酶/加氧酶的部分序列以及原绿藻和原绿球藻（原绿藻目）的系统发育
J Mol Evol. 1995 Jun;40(6):671-7. doi: 10.1007/BF00160516.
9
New nucleotide sequence data on the EMBL File Server.欧洲分子生物学实验室文件服务器上的新核苷酸序列数据。
Nucleic Acids Res. 1992 Jul 25;20(14):3797-812. doi: 10.1093/nar/20.14.3797.
本文引用的文献
1
Structures of the genes for the beta and epsilon subunits of spinach chloroplast ATPase indicate a dicistronic mRNA and an overlapping translation stop/start signal.菠菜叶绿体 ATP 酶β和ε亚基基因的结构表明，该基因是一个双顺反子 mRNA，且存在一个翻译终止/起始信号重叠。
Proc Natl Acad Sci U S A. 1982 Oct;79(20):6260-4. doi: 10.1073/pnas.79.20.6260.
2
The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.烟草叶绿体基因组的完整核苷酸序列：其基因组织与表达
EMBO J. 1986 Sep;5(9):2043-2049. doi: 10.1002/j.1460-2075.1986.tb04464.x.
3
Prochloron--a status report.原绿藻——一份现状报告。
Phycologia. 1984;23(2):203-8. doi: 10.2216/i0031-8884-23-2-203.1.
4
The 5S ribosomal RNAs of Paracoccus denitrificans and Prochloron.反硝化副球菌和原绿球藻的5S核糖体RNA。
Nucleic Acids Res. 1982 May 11;10(9):2963-70. doi: 10.1093/nar/10.9.2963.
5
The unc operon. Nucleotide sequence, regulation and structure of ATP-synthase.unc操纵子。ATP合酶的核苷酸序列、调控与结构。
Biochim Biophys Acta. 1984 Sep 6;768(2):164-200. doi: 10.1016/0304-4173(84)90003-x.
6
Estimation of evolutionary distances between homologous nucleotide sequences.同源核苷酸序列之间进化距离的估计。
Proc Natl Acad Sci U S A. 1981 Jan;78(1):454-8. doi: 10.1073/pnas.78.1.454.
7
Construction of phylogenetic trees.系统发育树的构建。
Science. 1967 Jan 20;155(3760):279-84. doi: 10.1126/science.155.3760.279.
8
A multiple origin for plastids and mitochondria.质体和线粒体的多起源。
Science. 1970 Aug 14;169(3946):641-6. doi: 10.1126/science.169.3946.641.
9
The 5S ribosomal RNA sequences of a red algal rhodoplast and a gymnosperm chloroplast. Implications for the evolution of plastids and cyanobacteria.一种红藻红质体和一种裸子植物叶绿体的5S核糖体RNA序列。对质体和蓝细菌进化的启示。
J Mol Evol. 1988;27(2):126-32. doi: 10.1007/BF02138372.
10
Phylogenies from molecular sequences: inference and reliability.基于分子序列的系统发育：推断与可靠性
Annu Rev Genet. 1988;22:521-65. doi: 10.1146/annurev.ge.22.120188.002513.
Zotero 插件