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溶剂结构对蛋白质中静电相互作用的影响。

Influence of the solvent structure on the electrostatic interactions in proteins.

作者信息

Rubinstein Alexander, Sherman Simon

机构信息

Eppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Nebraska Medical Center, Omaha, Nebraska 68198-6805, USA.

出版信息

Biophys J. 2004 Sep;87(3):1544-57. doi: 10.1529/biophysj.103.038620.

Abstract

The proper estimation of the influence of the many-body dynamic solvent microstructure on a pairwise electrostatic interaction (PEI) at the protein-solvent interface is very important for solving many biophysical problems. In this work, the PEI energy was calculated for a system that models the interface between a protein and an aqueous solvent. The concept of nonlocal electrostatics for interfacial electrochemical systems was used to evaluate the contribution of a solvent orientational polarization, correlated by the network of hydrogen bonds, into the PEI energy in proteins. The analytical expression for this energy was obtained in the form of Coulomb's law with an effective distance-dependent dielectric function. The asymptotic and numerical analysis carried out for this function revealed several features of dielectric heterogeneity at the protein-solvent interface. For charges located in close proximity to this interface, the values of the dielectric function for the short-distance electrostatic interactions were found to be remarkably smaller than those determined by the classical model, in which the solvent was considered as the uniform dielectric medium of high dielectric constant. Our results have shown that taking into consideration the dynamic solvent microstructure remarkably increases the value of the PEI energy at the protein-solvent interface.

摘要

正确评估多体动态溶剂微观结构对蛋白质-溶剂界面处成对静电相互作用(PEI)的影响,对于解决许多生物物理问题非常重要。在这项工作中,我们计算了一个模拟蛋白质与水性溶剂界面的系统的PEI能量。利用界面电化学系统的非局部静电学概念,评估了由氢键网络相关的溶剂取向极化对蛋白质中PEI能量的贡献。该能量的解析表达式以具有有效距离依赖介电函数的库仑定律形式获得。对该函数进行的渐近分析和数值分析揭示了蛋白质-溶剂界面处介电异质性的几个特征。对于紧邻该界面的电荷,发现短程静电相互作用的介电函数值明显小于经典模型(其中溶剂被视为高介电常数的均匀介电介质)所确定的值。我们的结果表明,考虑动态溶剂微观结构会显著增加蛋白质-溶剂界面处的PEI能量值。

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