Zhuravleva Anastasia V, Korzhnev Dmitry M, Kupce Eriks, Arseniev Alexander S, Billeter Martin, Orekhov Vladislav Yu
Swedish NMR Centre, Göteborg University, Box 465, 405 30 Göteborg, Sweden.
J Mol Biol. 2004 Oct 1;342(5):1599-611. doi: 10.1016/j.jmb.2004.08.001.
Dynamic properties of electron transfer pathways in a small blue copper cupredoxin are explored using an extensive 15N NMR relaxation study of reduced Pseudomonas aeruginosa azurin at four magnetic fields (500-900 MHz) and at two temperatures chosen well below the melting point of the protein. Following a careful model-free analysis, several protein regions with different dynamic regimes are identified. Nanosecond time-scale mobility characterizes various residues of the hydrophobic surface patch believed to mark the natural entry point for electrons, notably the surface-exposed copper-ligand His117. These findings are consistent with a gated electron transfer process according to the "dynamic docking" model. Residues 47-49 along intramolecular pathways of electrons show rigidity that is remarkably conserved when increasing the temperature. Three different conformational exchange processes were observed in the millisecond range, one near the only disulfide bridge in the molecule and two near the copper ion. The latter two processes are consistent with previous data such as crystal structures at various pH values and NMR relaxation dispersion experiments; they may indicate an additional gated electron transfer mechanism at slower time-scales.
通过对还原态铜绿假单胞菌天青蛋白在四个磁场(500 - 900 MHz)以及两个远低于蛋白质熔点的温度下进行广泛的15N NMR弛豫研究,探索了一种小型蓝色铜蓝蛋白中电子转移途径的动态特性。经过仔细的无模型分析,确定了几个具有不同动态机制的蛋白质区域。纳秒时间尺度的流动性表征了疏水表面斑块的各种残基,这些残基被认为是电子的天然进入点,特别是表面暴露的铜配体His117。这些发现与根据“动态对接”模型的门控电子转移过程一致。沿着分子内电子途径的47 - 49位残基表现出刚性,在升高温度时这种刚性显著保守。在毫秒范围内观察到三种不同的构象交换过程,一种在分子中唯一的二硫键附近,另外两种在铜离子附近。后两种过程与先前的数据如不同pH值下的晶体结构和NMR弛豫色散实验一致;它们可能表明在较慢时间尺度上存在另一种门控电子转移机制。