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硝化单胞菌细胞色素 c552 中轴向配体动力学的氧化还原状态依赖性

Redox state dependence of axial ligand dynamics in Nitrosomonas europaea cytochrome c552.

机构信息

Center for Infectious Disease and Immunology, Research Institute, Rochester General Hospital , Rochester, New York 14621, United States.

出版信息

J Phys Chem B. 2013 Dec 12;117(49):15720-8. doi: 10.1021/jp4064577. Epub 2013 Aug 20.

Abstract

Analysis of NMR spectra reveals that the heme axial Met ligand orientation and dynamics in Nitrosomonas europaea cytochrome c552 (Ne cyt c) are dependent on the heme redox state. In the oxidized state, the heme axial Met is fluxional, interconverting between two conformers related to each other by inversion through the Met δS atom. In the reduced state, there is no evidence of fluxionality, with the Met occupying one conformation similar to that seen in the homologous Pseudomonas aeruginosa cytochrome c551. Comparison of the observed and calculated pseudocontact shifts for oxidized Ne cyt c using the reduced protein structure as a reference structure reveals a redox-dependent change in the structure of the loop bearing the axial Met (loop 3). Analysis of nuclear Overhauser effects (NOEs) and existing structural data provides further support for the redox state dependence of the loop 3 structure. Implications for electron transfer function are discussed.

摘要

NMR 光谱分析表明,硝酸亚铁细胞色素 c552(Ne cyt c)中卟啉轴向 Met 配体的取向和动力学依赖于血红素的氧化还原状态。在氧化态下,血红素轴向 Met 是动态的,通过 Met δS 原子的反转在两个构象之间相互转化。在还原态下,没有发现动态性,Met 占据一个与同源假单胞菌细胞色素 c551 相似的构象。用还原蛋白结构作为参考结构比较氧化 Ne cyt c 的观察到和计算的赝接触位移表明,承载轴向 Met(环 3)的环的结构发生了依赖于氧化还原的变化。对核磁共振各向异性效应(NOE)和现有结构数据的分析进一步支持了环 3 结构对氧化还原状态的依赖性。讨论了对电子转移功能的影响。

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