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调节底物选择:SspB衔接蛋白将胞外应激反应的调节因子递送至AAA+蛋白酶ClpXP进行降解。

Modulating substrate choice: the SspB adaptor delivers a regulator of the extracytoplasmic-stress response to the AAA+ protease ClpXP for degradation.

作者信息

Flynn Julia M, Levchenko Igor, Sauer Robert T, Baker Tania A

机构信息

Department of Biology and Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.

出版信息

Genes Dev. 2004 Sep 15;18(18):2292-301. doi: 10.1101/gad.1240104.

Abstract

Adaptor proteins help proteases modulate substrate choice, ensuring that appropriate proteins are degraded at the proper time and place. SspB is an adaptor that delivers ssrA-tagged proteins to the AAA+ protease ClpXP for degradation. To identify new SspB-regulated substrates, we examined proteins captured by ClpXP(trap) in sspB(+) but not sspB(-) strains. RseA(1-108), a fragment of a transmembrane protein that regulates the extracytoplasmic-stress response, fits this criterion. In response to stress, RseA is cleaved on each side of the membrane and is released as a cytoplasmic fragment that remains bound in an inhibitory complex with the sigma(E) transcription factor. Trapping experiments together with biochemical studies show that ClpXP functions in concert with SspB to efficiently recognize and degrade RseA(1-108), and thereby releases sigma(E). Genetic studies confirm that ClpX and SspB participate in induction of the sigma(E) regulon in vivo, acting at the final step of an activating proteolytic cascade. Surprisingly, the SspB-recognition sequence in RseA(1-108) is unrelated to its binding sequence in the ssrA tag. Thus, these experiments elucidate the final steps in induction of the extracytoplasmic stress response and reveal that SspB delivers a broader spectrum of substrates to ClpXP than has been recognized.

摘要

衔接蛋白有助于蛋白酶调节底物选择,确保在适当的时间和地点降解合适的蛋白质。SspB是一种衔接蛋白,可将带有ssrA标签的蛋白质递送至AAA+蛋白酶ClpXP进行降解。为了鉴定新的受SspB调控的底物,我们检测了在sspB(+)菌株而非sspB(-)菌株中被ClpXP(trap)捕获的蛋白质。RseA(1-108),一种调节胞外应激反应的跨膜蛋白片段,符合这一标准。在应激反应中,RseA在膜的两侧被切割,并作为一个胞质片段释放出来,该片段与sigma(E)转录因子保持结合在抑制复合物中。捕获实验和生化研究表明,ClpXP与SspB协同作用,有效地识别和降解RseA(1-108),从而释放sigma(E)。遗传学研究证实,ClpX和SspB参与体内sigma(E)调控子的诱导,作用于激活蛋白水解级联反应的最后一步。令人惊讶的是,RseA(1-108)中的SspB识别序列与其在ssrA标签中的结合序列无关。因此,这些实验阐明了胞外应激反应诱导的最后步骤,并揭示SspB向ClpXP递送的底物谱比之前认识到的更广。

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本文引用的文献

1
Control of the alternative sigma factor sigmaE in Escherichia coli.
Curr Opin Microbiol. 2004 Apr;7(2):157-62. doi: 10.1016/j.mib.2004.02.010.
2
ClpA and ClpX ATPases bind simultaneously to opposite ends of ClpP peptidase to form active hybrid complexes.
J Struct Biol. 2004 Apr-May;146(1-2):217-26. doi: 10.1016/j.jsb.2003.11.023.
3
Bivalent tethering of SspB to ClpXP is required for efficient substrate delivery: a protein-design study.
Mol Cell. 2004 Feb 13;13(3):443-9. doi: 10.1016/s1097-2765(04)00027-9.
4
Distinct peptide signals in the UmuD and UmuD' subunits of UmuD/D' mediate tethering and substrate processing by the ClpXP protease.
Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13219-24. doi: 10.1073/pnas.2235804100. Epub 2003 Oct 31.
5
Proteolysis in bacterial regulatory circuits.
Annu Rev Cell Dev Biol. 2003;19:565-87. doi: 10.1146/annurev.cellbio.19.110701.153228.
7
Structure of a delivery protein for an AAA+ protease in complex with a peptide degradation tag.
Mol Cell. 2003 Aug;12(2):365-72. doi: 10.1016/j.molcel.2003.08.014.
9
Crystal structure of ClpX molecular chaperone from Helicobacter pylori.
J Biol Chem. 2003 Dec 12;278(50):50664-70. doi: 10.1074/jbc.M305882200. Epub 2003 Sep 26.
10
New members of the Escherichia coli sigmaE regulon identified by a two-plasmid system.
FEMS Microbiol Lett. 2003 Aug 8;225(1):1-7. doi: 10.1016/S0378-1097(03)00480-4.

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