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新鞘氨醇菌属新种五芳烃食新鞘氨醇菌,一种从河口沉积物中分离出的高分子量多环芳烃降解细菌。

Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment.

作者信息

Sohn Jae Hak, Kwon Kae Kyoung, Kang Ji-Hyun, Jung Hong-Bae, Kim Sang-Jin

机构信息

Microbiology Laboratory, Korea Ocean Research & Development Institute, Ansan, PO Box 29, 425-600, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2004 Sep;54(Pt 5):1483-1487. doi: 10.1099/ijs.0.02945-0.

Abstract

A Gram-negative, yellow-pigmented, halophilic bacterial strain US6-1T, which degrades high-molecular-mass polycyclic aromatic hydrocarbons of two to five rings, was isolated from muddy sediment of Ulsan Bay, Republic of Korea. The 16S rRNA gene of the isolate showed high sequence similarity to Novosphingobium subarcticum (96.23 %) and Sphingopyxis alaskensis (96.18 %); however, the isolate formed a distinct phyletic line within the genus Novosphingobium. DNA-DNA relatedness between US6-1T and the closest strain N. subarcticum revealed that strain US6-1T was independent from this species. Isolate US6-1T had ubiquinone 10 and a DNA G + C ratio of 61.1 mol%. Major fatty acids were octadecanoic acid (18 : 1omega7), hexadecanoic acid (16 : 1omega7) and 2-hydroxy-myristic acid (14 : 0 2-OH). On the basis of polyphasic taxonomic evidence, strain US6-1T is proposed to represent a novel species in the genus Novosphingobium for which the name Novosphingobium pentaromativorans sp. nov. is proposed. The type strain is US6-1T (= KCTC 10454T = JCM 12182T).

摘要

从韩国蔚山湾的泥质沉积物中分离出一株革兰氏阴性、产黄色色素、嗜盐的细菌菌株US6-1T,该菌株可降解两至五环的高分子量多环芳烃。该分离株的16S rRNA基因与亚北极新鞘氨醇菌(96.23%)和阿拉斯加鞘氨醇杆菌(96.18%)显示出高度的序列相似性;然而,该分离株在新鞘氨醇菌属内形成了一个独特的进化分支。US6-1T与最接近的菌株亚北极新鞘氨醇菌之间的DNA-DNA相关性表明,菌株US6-1T与该物种独立。分离株US6-1T含有泛醌10,DNA的G + C含量为61.1 mol%。主要脂肪酸为十八碳烯酸(18 : 1ω7)、十六碳烯酸(16 : 1ω7)和2-羟基肉豆蔻酸(14 : 0 2-OH)。基于多相分类学证据,建议菌株US6-1T代表新鞘氨醇菌属中的一个新物种,命名为Novosphingobium pentaromativorans sp. nov.。模式菌株为US6-1T(= KCTC 10454T = JCM 12182T)。

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