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印度尼西亚腔棘鱼(曼氏矛尾鱼,Latimeria menadoensis)的Hoxc8早期增强子。

Hoxc8 early enhancer of the Indonesian coelacanth, Latimeria menadoensis.

作者信息

Shashikant Cooduvalli, Bolanowski Stacey A, Danke Joshua, Amemiya Chris T

机构信息

Department of Dairy and Animal Science, College of Agricultural Sciences, The Pennsylvania State University, University Park, 324 Henning Building, University Park, PA 16802, USA.

出版信息

J Exp Zool B Mol Dev Evol. 2004 Nov 15;302(6):557-63. doi: 10.1002/jez.b.21018.

DOI:10.1002/jez.b.21018
PMID:15470754
Abstract

Hoxc8 early enhancer controls the initiation and establishment phase of Hoxc8 expression in the mouse. Comparative studies indicate the presence of Hoxc8 early enhancer sequences in different vertebrate clades including mammals, birds and fish. Previous studies have shown differences between teleost and mammalian Hoxc8 early enhancers with respect to sequence and organization of protein binding elements. This raises the question of when the Hoxc8 early enhancer arose and how it has become modified in different vertebrate lineages. Here, we describe Hoxc8 early enhancer from the Indonesian coelacanth, Latimeria menadoensis. Coelacanths are the only extant lobefinned fish whose genome is tractable to genome analysis. The Latimeria Hoxc8 early enhancer sequence more closely resembles that of the mouse than that of Fugu or zebrafish. When assayed for enhancer activity by reporter gene analysis in transgenic mouse embryos, Latimeria Hoxc8 early enhancer directs expression to the posterior neural tube and mesoderm similar to that of the mouse enhancer. These observations support a close relationship between coelacanths and tetrapods and place the origin of a common Hoxc8 early enhancer sequence within the sarcopterygian lineage. The divergence of teleost (actinopterygii) Hoxc8 early enhancer may reflect a case of relaxed selection or other forms of instability induced by genome duplication events.

摘要

Hoxc8早期增强子控制小鼠中Hoxc8表达的起始和建立阶段。比较研究表明,在包括哺乳动物、鸟类和鱼类在内的不同脊椎动物类群中存在Hoxc8早期增强子序列。先前的研究已经表明,硬骨鱼和哺乳动物的Hoxc8早期增强子在蛋白质结合元件的序列和组织方面存在差异。这就提出了一个问题,即Hoxc8早期增强子是何时出现的,以及它在不同脊椎动物谱系中是如何被修饰的。在这里,我们描述了来自印度尼西亚腔棘鱼(Latimeria menadoensis)的Hoxc8早期增强子。腔棘鱼是现存唯一一种其基因组易于进行基因组分析的叶鳍鱼。腔棘鱼的Hoxc8早期增强子序列与小鼠的序列比与河豚或斑马鱼的序列更相似。当通过转基因小鼠胚胎中的报告基因分析来检测增强子活性时,腔棘鱼的Hoxc8早期增强子将表达导向后神经管和中胚层,类似于小鼠增强子的情况。这些观察结果支持了腔棘鱼和四足动物之间的密切关系,并将共同的Hoxc8早期增强子序列的起源置于肉鳍鱼谱系中。硬骨鱼(辐鳍鱼纲)Hoxc8早期增强子的分歧可能反映了一种选择放松的情况或由基因组复制事件诱导的其他形式的不稳定性。

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Hoxc8 early enhancer of the Indonesian coelacanth, Latimeria menadoensis.印度尼西亚腔棘鱼(曼氏矛尾鱼,Latimeria menadoensis)的Hoxc8早期增强子。
J Exp Zool B Mol Dev Evol. 2004 Nov 15;302(6):557-63. doi: 10.1002/jez.b.21018.
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Comparative cis-regulatory analyses identify new elements of the mouse Hoxc8 early enhancer.比较顺式调控分析确定了小鼠Hoxc8早期增强子的新元件。
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Comparison of diverged Hoxc8 early enhancer activities reveals modification of regulatory interactions at conserved cis-acting elements.分化的Hoxc8早期增强子活性比较揭示了保守顺式作用元件处调控相互作用的改变。
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Divergence of Hoxc8 early enhancer parallels diverged axial morphologies between mammals and fishes.Hoxc8早期增强子的差异与哺乳动物和鱼类之间不同的轴向形态学特征相似。
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引用本文的文献

1
Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis.印度尼西亚腔棘鱼Latimeria menadoensis 转录组分析。
BMC Genomics. 2013 Aug 8;14:538. doi: 10.1186/1471-2164-14-538.
2
A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome.活化石的基因组中的活化石:腔棘鱼基因组中的前导转座子。
Mol Biol Evol. 2012 Mar;29(3):985-93. doi: 10.1093/molbev/msr267. Epub 2011 Oct 31.
3
Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position.
腔棘鱼的 shh 顺式调控结构的保守性与其祖先的系统发育位置一致。
Evodevo. 2010 Nov 3;1(1):11. doi: 10.1186/2041-9139-1-11.
4
Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome.腔棘鱼 HOX 簇的完整特征描述为其基因组的缓慢进化提供了进一步的证据。
Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3622-7. doi: 10.1073/pnas.0914312107. Epub 2010 Feb 5.