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用于高密度烷烃分子动力学模拟的短程排斥力场描述。

A force-field description of short-range repulsions for high density alkane molecular dynamics simulations.

作者信息

Hayes Joseph M, Greer James C, Morton-Blake David A

机构信息

Department of Chemistry, University of Dublin, Trinity College, Dublin, Ireland.

出版信息

J Comput Chem. 2004 Dec;25(16):1953-66. doi: 10.1002/jcc.20116.

Abstract

The use of Buckingham (exp-6) van der Waals potentials in molecular dynamics (MD) simulations can quite successfully reproduce experimental thermodynamic data at low densities. However, they are less successful in producing a description of the repulsive regions of the potential energy surface (PES) that is in accord with the results of high-level ab initio computations. We show that Morse potentials can be parameterized to give excellent fits to both the attractive and repulsive regions of the PES. The best set of alkane van der Waals Morse function parameters reported to date for the description of nonbond repulsive interactions is presented, as determined by comparison with both ab initio and experimental results. C...C, H...H and C...H atom-pair potentials employing parameter sets based on the use of the geometric mean in the fitting procedure are found to be portable from methane to n-butane. Fitting to a combination of methane dimer interaction energies and forces from ab initio calculations yields parameter sets whose performance is superior to those determined from the interaction energies alone. Used in MD simulations, our newly developed parameter sets predict thermodynamic functions that show better agreement with experiment than those based on parameter sets in common use.

摘要

在分子动力学(MD)模拟中使用巴克明斯特(指数 - 6)范德华势能够相当成功地在低密度下重现实验热力学数据。然而,它们在生成与高水平从头算计算结果相符的势能面(PES)排斥区域描述方面则不太成功。我们表明,可以对莫尔斯势进行参数化,以使其对PES的吸引和排斥区域都能给出出色的拟合。通过与从头算和实验结果进行比较,给出了迄今为止报道的用于描述非键排斥相互作用的烷烃范德华莫尔斯函数参数的最佳集合。发现采用基于在拟合过程中使用几何平均值的参数集的C...C、H...H和C...H原子对势可从甲烷移植到正丁烷。拟合甲烷二聚体相互作用能与从头算计算得出的力的组合,得到的参数集性能优于仅由相互作用能确定的参数集。在MD模拟中使用时,我们新开发的参数集预测的热力学函数与实验结果的吻合度比基于常用参数集的结果更好。

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