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深入了解S-腺苷-L-甲硫氨酸的鎓硫属元素类似物的极性反应性。

Insight into the polar reactivity of the onium chalcogen analogues of S-adenosyl-L-methionine.

作者信息

Iwig David F, Booker Squire J

机构信息

Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

出版信息

Biochemistry. 2004 Oct 26;43(42):13496-509. doi: 10.1021/bi048693+.

Abstract

S-Adenosyl-L-methionine (AdoMet) is one of Nature's most diverse metabolites, used not only in a large number of biological reactions but amenable to several different modes of reactivity. The types of transformations in which it is involved include decarboxylation, electrophilic addition to any of the three carbons bonded to the central sulfur atom, proton removal at carbons adjacent to the sulfonium, and reductive cleavage to generate 5'-deoxyadenosyl 5'-radical intermediates. At physiological pH and temperature, AdoMet is subject to three spontaneous degradation pathways, the first of which is racemization of the chiral sulfonium group, which takes place in a pH-independent manner. The two remaining pathways are pH-dependent and include (1) intramolecular attack of the alpha-carboxylate group onto the gamma-carbon, affording L-homoserine lactone (HSL) and 5'-methylthioadenosine (MTA), and (2) deprotonation at C-5', initiating a cascade that results in formation of adenine and S-ribosylmethionine. Herein, we describe pH-dependent stability studies of AdoMet and its selenium and tellurium analogues, Se-adenosyl-L-selenomethionine and Te-adenosyl-L-telluromethionine (SeAdoMet and TeAdoMet, respectively), at 37 degrees C and constant ionic strength, which we use as a probe of their relative intrinsic reactivities. We find that with AdoMet intramolecular nucleophilic attack to afford HSL and MTA exhibits a pH-rate profile having two titratable groups with apparent pK(a) values of 1.2 +/- 0.4 and 8.2 +/- 0.05 and displaying first-order rate constants of <0.7 x 10(-6) s(-1) at pH values less than 0.5, approximately 3 x 10(-6) s(-1) at pH values between 2 and 7, and approximately 15 x 10(-6) s(-1) at pH values greater than 9. Degradation via deprotonation at C-5' follows a pH-rate profile having one titratable group with an apparent pK(a) value of approximately 11.5. The selenium analogue decays significantly faster via intramolecular nucleophilic attack, also exhibiting a pH-rate profile with two titratable groups with pK(a) values of approximately 0.86 and 8.0 +/- 0.1 with first-order rate constants of <7 x 10(-6) s(-1) at pH values less than 0.9, approximately 32 x 10(-6) s(-1) at pH values between 2 and 7, and approximately 170 x 10(-6) s(-1) at pH values greater than 9. Degradation via deprotonation at C-5' proceeds with one titratable group displaying an apparent pK(a) value of approximately 14.1. Unexpectedly, TeAdoMet did not decay at an observable rate via either of these two pathways. Last, enzymatically synthesized AdoMet was found to racemize at rates that were consistent with earlier studies (Hoffman, J. L. (1986) Biochemistry 25, 4444-4449); however, SeAdoMet and TeAdoMet did not racemize at detectable rates. In the accompanying paper, we use the information obtained in these model studies to probe the mechanism of cyclopropane fatty acid synthase via use of the onium chalcogens of AdoMet as methyl donors.

摘要

S-腺苷-L-甲硫氨酸(AdoMet)是自然界中最多样化的代谢产物之一,不仅用于大量的生物反应,而且适合多种不同的反应模式。它所参与的转化类型包括脱羧反应、对与中心硫原子相连的三个碳原子中的任何一个进行亲电加成反应、在锍离子相邻的碳原子上去除质子以及进行还原裂解以生成5'-脱氧腺苷5'-自由基中间体。在生理pH值和温度下,AdoMet会经历三种自发降解途径,第一种是手性锍基团的外消旋化,其以与pH无关的方式发生。剩下的两种途径与pH有关,包括:(1)α-羧基对γ-碳的分子内攻击,生成L-高丝氨酸内酯(HSL)和5'-甲硫基腺苷(MTA);(2)在C-5'处去质子化,引发一系列反应,导致腺嘌呤和S-核糖基甲硫氨酸的形成。在此,我们描述了AdoMet及其硒和碲类似物,即硒代腺苷-L-硒代甲硫氨酸和碲代腺苷-L-碲代甲硫氨酸(分别为SeAdoMet和TeAdoMet)在37℃和恒定离子强度下的pH依赖性稳定性研究,我们将其用作它们相对固有反应活性的探针。我们发现,对于AdoMet,分子内亲核攻击生成HSL和MTA表现出一种pH-速率曲线,该曲线有两个可滴定基团,表观pKa值分别为1.2±0.4和8.2±0.05,在pH值小于0.5时一级速率常数<0.7×10⁻⁶ s⁻¹,在pH值2至7之间约为3×10⁻⁶ s⁻¹,在pH值大于9时约为15×10⁻⁶ s⁻¹。通过C-5'处去质子化进行的降解遵循一种pH-速率曲线,该曲线有一个可滴定基团,表观pKa值约为11.5。硒类似物通过分子内亲核攻击降解得明显更快,也表现出一种pH-速率曲线,有两个可滴定基团,pKa值约为0.86和8.0±0.1,在pH值小于0.9时一级速率常数<7×10⁻⁶ s⁻¹,在pH值2至7之间约为32×10⁻⁶ s⁻¹,在pH值大于9时约为170×10⁻⁶ s⁻¹。通过C-5'处去质子化进行的降解有一个可滴定基团,表观 pKa值约为14.1。出乎意料的是,TeAdoMet通过这两种途径中的任何一种都没有以可观察到的速率降解。最后,发现酶促合成的AdoMet外消旋化的速率与早期研究一致(霍夫曼,J. L.(1986年)《生物化学》25,4444 - 4449);然而,SeAdoMet和TeAdoMet没有以可检测到的速率外消旋化。在随附的论文中,我们利用在这些模型研究中获得的信息,通过使用AdoMet的鎓族硫属元素作为甲基供体来探究环丙烷脂肪酸合酶的机制。

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