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动力学模拟中原子涨落的振动光谱。II. 飞秒时间分辨率下溶剂诱导的频率涨落。

Vibrational spectra from atomic fluctuations in dynamics simulations. II. Solvent-induced frequency fluctuations at femtosecond time resolution.

作者信息

Schmitz Matthias, Tavan Paul

机构信息

Theoretische Biophysik, Lehrstuhl für Biomolekulare Optik, Ludwig-Maximilians-Universität München, Oettingenstrasse 67, 80538 München, Germany.

出版信息

J Chem Phys. 2004 Dec 22;121(24):12247-58. doi: 10.1063/1.1822915.

DOI:10.1063/1.1822915
PMID:15606242
Abstract

The midinfrared (MIR) spectra of molecules in polar solvents exhibit inhomogeneously broadened bands whose spectral positions are shifted as compared to the gas phase. The shifts are caused by interactions with structured solvation shells and the broadenings by fluctuations of these interactions. The MIR spectra can be calculated from hybrid molecular dynamics (MD) simulations, which treat the solute molecule by density functional theory and the solvent by molecular mechanics by the so-called instantaneous normal mode analysis (INMA) or by Fourier transforming the time correlation function (FTTCF) of the molecular dipole moment. In Paper I of this work [M. Schmitz and P. Tavan, J. Chem. Phys. 121, 12233 (2004)] we explored an alternative method based on generalized virial (GV) frequencies noting, however, that GV systematically underestimates frequencies. As shown by us these artifacts are caused by solvent-induced fluctuations of the (i) equilibrium geometry, (ii) force constants, and (iii) normal mode directions as well as by (iv) diagonal and (v) off-diagonal anharmonicities. Here we now show, by analyzing the time scales of fluctuations and sample MD trajectories of formaldehyde in the gas phase and in water, that all these sources of computational artifacts can be made visible by a Fourier analysis of the normal coordinates. Correspondingly, the error sources (i) and (iii)-(v) can be removed by bandpass filtering, as long as the spectral signatures of the respective effects are well separated from the fundamental band. Furthermore, the artifacts arising from effect (ii) can be strongly diminished by a time-resolved version of the GV approach (TF-GV). The TF-GV method then yields for each mode j a trajectory of the vibrational frequency omega(j)(tmid R:tau) at a time resolution tau>tau(j), which is only limited by the corresponding oscillation time tau(j)=2pi/omega(j) and, thus, is in the femtosecond range. A correlation analysis of these trajectories clearly separates the librational motions from the conformational dynamics of the solvation shells and yields the inhomogeneously broadened MIR spectra, if the theory of motional narrowing is properly included. The MIR spectrum of formaldehyde in solution obtained by TF-GV agrees very well with the FTTCF result, if one applies the so-called "harmonic approximation" quantum correction factor and a temperature scaling to the FTTCF intensities. Also for INMA an excellent agreement is achieved if one disregards a slight INMA overestimate of linewidths.

摘要

极性溶剂中分子的中红外(MIR)光谱呈现出非均匀展宽的谱带,其光谱位置与气相相比发生了偏移。这种偏移是由与结构化溶剂化壳层的相互作用引起的,而展宽则是由这些相互作用的波动导致的。MIR光谱可以通过混合分子动力学(MD)模拟来计算,该模拟通过所谓的瞬时简正模式分析(INMA)或通过对分子偶极矩的时间关联函数进行傅里叶变换(FTTCF),用密度泛函理论处理溶质分子,用分子力学处理溶剂。在本工作的第一篇论文[M. Schmitz和P. Tavan,《化学物理杂志》121, 12233 (2004)]中,我们探索了一种基于广义维里(GV)频率的替代方法,不过要注意GV系统地低估了频率。正如我们所表明的,这些假象是由以下因素引起的溶剂诱导波动:(i)平衡几何结构,(ii)力常数,(iii)简正模式方向,以及(iv)对角和(v)非对角非谐性。在这里,我们通过分析气相和水中甲醛波动的时间尺度以及样本MD轨迹表明,通过对简正坐标进行傅里叶分析,可以使所有这些计算假象源变得可见。相应地,只要各效应的光谱特征与基频带能很好地分离,误差源(i)以及(iii) - (v)可以通过带通滤波去除。此外,由效应(ii)引起的假象可以通过GV方法的时间分辨版本(TF - GV)得到显著减少。然后,TF - GV方法为每个模式j产生一个振动频率ω(j)(tmid R:tau)的轨迹,其时间分辨率τ>τ(j),这仅受相应振荡时间τ(j)=2π/ω(j)的限制,因此处于飞秒范围内。如果恰当地纳入运动窄化理论,对这些轨迹进行关联分析可以清楚地将平动运动与溶剂化壳层的构象动力学区分开来,并得到非均匀展宽的MIR光谱。如果对FTTCF强度应用所谓的“谐波近似”量子校正因子和温度标度,通过TF - GV得到的溶液中甲醛的MIR光谱与FTTCF结果非常吻合。如果忽略INMA对线宽的轻微高估,对于INMA也能实现很好的一致性。

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