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糖结构与动力学的多种非谐振动探针

Multiple anharmonic vibrational probes of sugar structure and dynamics.

作者信息

Cai Kaicong, Wang Jianping

机构信息

Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People's Republic of China.

出版信息

J Phys Chem B. 2009 Feb 12;113(6):1681-92. doi: 10.1021/jp8070025.

DOI:10.1021/jp8070025
PMID:19152255
Abstract

Quantum mechanical computations and molecular dynamics simulations are carried out for the simplest sugar glycolaldehyde to gain insight into the underlying force fields that determine the vibrational spectroscopic parameters relevant to structure and dynamics. The harmonic and anharmonic vibrational frequencies of the 3N--6 modes and their diagonal and off-diagonal anharmonicities are evaluated using the hybrid B3LYP functional in comparison with other high-level theories. Very good performance of B3LYP/6-31+G** is found in predicting the anharmonic frequencies by statistical analysis and by comparison to gas-phase experiments. Full cubic and semidiagonal quartic anharmonic force constants, the origin of the anharmonicities, the isotope dependence of the anharmonicities, and the polarizable continuum solvent effect on the anharmonicities are examined, in particular, for the CO, C-H, and O-H stretching modes. Site-dependent dynamical interactions between glycolaldehyde and water molecules in the hydration shells are examined by molecular dynamics simulations employing a set of molecular mechanical force fields developed on the basis of quantum mechanical computations. The statistical distributions and correlations of the fundamental transition frequencies and transition dipoles are obtained through instantaneous normal-mode analysis. The simultaneous assessment of multiple parameters of multiple vibrational probes shall prove useful in understanding the characteristics of sugar structure and dynamics expressed in two-dimensional infrared correlation spectra.

摘要

对最简单的糖乙醇醛进行了量子力学计算和分子动力学模拟,以深入了解决定与结构和动力学相关的振动光谱参数的潜在力场。使用混合B3LYP泛函评估了3N - 6模式的谐波和非谐波振动频率及其对角和非对角非谐性,并与其他高级理论进行了比较。通过统计分析和与气相实验的比较,发现B3LYP/6 - 31 + G**在预测非谐频率方面具有非常好的性能。特别针对CO、C - H和O - H伸缩模式,研究了全立方和半对角四次非谐力常数、非谐性的起源、非谐性的同位素依赖性以及可极化连续介质溶剂对非谐性的影响。通过使用基于量子力学计算开发的一组分子力学力场进行分子动力学模拟,研究了水合壳层中乙醇醛与水分子之间的位点依赖性动态相互作用。通过瞬时正则模式分析获得了基本跃迁频率和跃迁偶极矩的统计分布和相关性。对多个振动探针的多个参数进行同时评估,将有助于理解二维红外相关光谱中所表达的糖结构和动力学特征。

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