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Two ancient rounds of polyploidy in rice genome.
J Zhejiang Univ Sci B. 2005 Feb;6(2):87-90. doi: 10.1631/jzus.2005.B0087.
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Evidence that rice and other cereals are ancient aneuploids.
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4
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage.
Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):472-7. doi: 10.1073/pnas.0908007107. Epub 2009 Dec 4.
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Conversion between 100-million-year-old duplicated genes contributes to rice subspecies divergence.
BMC Genomics. 2021 Jun 19;22(1):460. doi: 10.1186/s12864-021-07776-y.
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Duplication and DNA segmental loss in the rice genome: implications for diploidization.
New Phytol. 2005 Mar;165(3):937-46. doi: 10.1111/j.1469-8137.2004.01293.x.
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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.
Proc Natl Acad Sci U S A. 2004 Jun 29;101(26):9903-8. doi: 10.1073/pnas.0307901101. Epub 2004 May 25.
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A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales.
Genome Biol Evol. 2016 Apr 21;8(4):1150-64. doi: 10.1093/gbe/evw060.
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The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis.
Plant Physiol. 2003 Apr;131(4):1855-67. doi: 10.1104/pp.102.016188.

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Novel genes and alleles of the BTB/POZ protein family in Oryza rufipogon.
Sci Rep. 2023 Sep 19;13(1):15466. doi: 10.1038/s41598-023-41269-0.
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Dating Whole Genome Duplication in and Potential Adaptive Values of Retained Gene Duplicates.
Int J Mol Sci. 2019 Apr 19;20(8):1926. doi: 10.3390/ijms20081926.
4
Multiple mechanisms and challenges for the application of allopolyploidy in plants.
Int J Mol Sci. 2012;13(7):8696-8721. doi: 10.3390/ijms13078696. Epub 2012 Jul 13.
5
Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication.
Plant Physiol. 2011 Apr;155(4):2081-95. doi: 10.1104/pp.110.169599. Epub 2011 Feb 2.
6
Origin and diversification of land plant CC-type glutaredoxins.
Genome Biol Evol. 2009 Jul 31;1:265-77. doi: 10.1093/gbe/evp025.
7
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage.
Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):472-7. doi: 10.1073/pnas.0908007107. Epub 2009 Dec 4.
8
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.
Genome Res. 2008 Dec;18(12):1944-54. doi: 10.1101/gr.080978.108. Epub 2008 Oct 2.
9
Selection and mutation on microRNA target sequences during rice evolution.
BMC Genomics. 2008 Oct 2;9:454. doi: 10.1186/1471-2164-9-454.
10
TCP transcription factors predate the emergence of land plants.
J Mol Evol. 2007 Jul;65(1):23-33. doi: 10.1007/s00239-006-0174-z. Epub 2007 Jun 12.

本文引用的文献

2
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes.
Plant Cell. 2004 Jul;16(7):1667-78. doi: 10.1105/tpc.021345. Epub 2004 Jun 18.
3
Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.
Proc Natl Acad Sci U S A. 2004 Jun 29;101(26):9903-8. doi: 10.1073/pnas.0307901101. Epub 2004 May 25.
4
A comparative phylogenetic approach for dating whole genome duplication events.
Bioinformatics. 2004 Jan 22;20(2):180-5. doi: 10.1093/bioinformatics/bth022.
5
Structure and evolution of cereal genomes.
Curr Opin Genet Dev. 2003 Dec;13(6):644-50. doi: 10.1016/j.gde.2003.10.002.
6
A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.
Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12265-70. doi: 10.1073/pnas.1434476100. Epub 2003 Oct 6.
7
Evidence that rice and other cereals are ancient aneuploids.
Plant Cell. 2003 Sep;15(9):2192-202. doi: 10.1105/tpc.014019.
8
The hidden duplication past of Arabidopsis thaliana.
Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13627-32. doi: 10.1073/pnas.212522399. Epub 2002 Oct 8.
10
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).
Science. 2002 Apr 5;296(5565):92-100. doi: 10.1126/science.1068275.

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