• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

PENDULUM——一种基于指南的STR混合图谱解读方法。

PENDULUM--a guideline-based approach to the interpretation of STR mixtures.

作者信息

Bill Martin, Gill Peter, Curran James, Clayton Tim, Pinchin Richard, Healy Marcus, Buckleton John

机构信息

The Forensic Science Service, Trident Court, Solihull Parkway, Birmingham Business Park, Solihull B377YN, UK.

出版信息

Forensic Sci Int. 2005 Mar 10;148(2-3):181-9. doi: 10.1016/j.forsciint.2004.06.037.

DOI:10.1016/j.forsciint.2004.06.037
PMID:15639613
Abstract

Several years ago, a theory to interpret mixed DNA profiles was proposed that included a consideration of peak area using the method of least squares. This method of mixture interpretation has not been widely adopted because of the complexity of the associated calculations. Most reporting officers (RO) employ an experience and judgement based approach to the interpretation of mixed DNA profiles. Here we present an approach that has formalised the thinking behind this experience and judgement. This has been written into a computer program package called PENDULUM. The program uses a least squares method to estimate the pre-amplification mixture proportion for two potential contributors. It then calculates the heterozygous balance for all of the potential sets of genotypes. A list of "possible" genotypes is generated using a set of heuristic rules. External to the programme the candidate genotypes may then be used to formulate likelihood ratios (LR) that are based on alternative casework propositions. The system does not represent a black box approach; rather it has been integrated into the method currently used by the reporting officers at the Forensic Science Service (FSS). The time saved in automating routine calculations associated with mixtures analysis is significant. In addition, the computer program assists in unifying reporting processes, thereby improving the consistency of reporting.

摘要

几年前,有人提出了一种解释混合DNA图谱的理论,该理论包括使用最小二乘法来考虑峰面积。由于相关计算的复杂性,这种混合图谱解释方法尚未被广泛采用。大多数报告官员(RO)采用基于经验和判断的方法来解释混合DNA图谱。在此,我们提出一种方法,该方法已将这种经验和判断背后的思路形式化。这已被编写成一个名为PENDULUM的计算机程序包。该程序使用最小二乘法来估计两个潜在贡献者的扩增前混合比例。然后,它计算所有潜在基因型组合的杂合平衡。使用一组启发式规则生成“可能的”基因型列表。在程序外部,候选基因型可用于制定基于替代案件假设的似然比(LR)。该系统并不代表一种黑箱方法;相反,它已被整合到法医科学服务局(FSS)报告官员目前使用的方法中。在自动化与混合物分析相关的常规计算方面节省的时间是可观的。此外,该计算机程序有助于统一报告流程,从而提高报告的一致性。

相似文献

1
PENDULUM--a guideline-based approach to the interpretation of STR mixtures.PENDULUM——一种基于指南的STR混合图谱解读方法。
Forensic Sci Int. 2005 Mar 10;148(2-3):181-9. doi: 10.1016/j.forsciint.2004.06.037.
2
Least-square deconvolution: a framework for interpreting short tandem repeat mixtures.最小二乘反卷积:一种解释短串联重复序列混合物的框架。
J Forensic Sci. 2006 Nov;51(6):1284-97. doi: 10.1111/j.1556-4029.2006.00268.x.
3
Interpreting Y chromosome STR haplotype mixture.解读Y染色体短串联重复序列单倍型混合物
Leg Med (Tokyo). 2010 May;12(3):137-43. doi: 10.1016/j.legalmed.2010.02.003. Epub 2010 Mar 25.
4
Empirical analysis of the STR profiles resulting from conceptual mixtures.概念性混合产生的STR图谱的实证分析。
J Forensic Sci. 2005 Nov;50(6):1361-6.
5
LoComatioN: a software tool for the analysis of low copy number DNA profiles.LoComatioN:一种用于分析低拷贝数DNA图谱的软件工具。
Forensic Sci Int. 2007 Mar 2;166(2-3):128-38. doi: 10.1016/j.forsciint.2006.04.016. Epub 2006 Jun 8.
6
Mixture interpretation: defining the relevant features for guidelines for the assessment of mixed DNA profiles in forensic casework.混合样本解释:为法医案件工作中混合DNA图谱评估指南确定相关特征。
J Forensic Sci. 2009 Jul;54(4):810-21. doi: 10.1111/j.1556-4029.2009.01046.x. Epub 2009 Apr 2.
7
Enhanced kinship analysis and STR-based DNA typing for human identification in mass fatality incidents: the Swissair flight 111 disaster.大规模死亡事件中用于人类身份识别的强化亲属关系分析和基于短串联重复序列的DNA分型:瑞士航空111号航班灾难
J Forensic Sci. 2004 Sep;49(5):939-53.
8
Systematic analysis of stutter percentages and allele peak height and peak area ratios at heterozygous STR loci for forensic casework and database samples.对法医案件样本和数据库样本中杂合STR基因座的口吃百分比、等位基因峰高和峰面积比进行系统分析。
J Forensic Sci. 2004 Sep;49(5):968-80.
9
Interpretation of complex DNA profiles using empirical models and a method to measure their robustness.使用经验模型解释复杂的DNA图谱及其稳健性测量方法。
Forensic Sci Int Genet. 2008 Mar;2(2):91-103. doi: 10.1016/j.fsigen.2007.10.160. Epub 2007 Dec 11.
10
The application of an automated allele concordance analysis system (CompareCalls) to ensure the accuracy of single-source STR DNA profiles.应用自动等位基因一致性分析系统(CompareCalls)来确保单源STR DNA图谱的准确性。
J Forensic Sci. 2004 May;49(3):492-9.

引用本文的文献

1
Separation/extraction, detection, and interpretation of DNA mixtures in forensic science (review).法医学中DNA混合物的分离/提取、检测及解读(综述)
Int J Legal Med. 2018 Sep;132(5):1247-1261. doi: 10.1007/s00414-018-1862-0. Epub 2018 May 25.
2
The forensic value of X-linked markers in mixed-male DNA analysis.X连锁标记在混合男性DNA分析中的法医学价值。
Int J Legal Med. 2018 Sep;132(5):1281-1285. doi: 10.1007/s00414-018-1841-5. Epub 2018 May 4.
3
Evaluation of forensic DNA mixture evidence: protocol for evaluation, interpretation, and statistical calculations using the combined probability of inclusion.
法医DNA混合证据评估:使用包含概率组合进行评估、解释和统计计算的协议
BMC Genet. 2016 Aug 31;17(1):125. doi: 10.1186/s12863-016-0429-7.
4
DNA reviews: the national DNA database of the United Kingdom.DNA 评论:英国国家 DNA 数据库
Forensic Sci Med Pathol. 2007 Dec;3(4):285-8. doi: 10.1007/s12024-007-9014-8.
5
Automated DNA profile analysis.自动化DNA图谱分析。
Forensic Sci Med Pathol. 2005 Dec;1(4):285-8. doi: 10.1385/FSMP:1:4:285.
6
The National DNA Data Bank of Canada: a Quebecer perspective.加拿大国家DNA数据库:魁北克人的视角。
Front Genet. 2013 Nov 20;4:249. doi: 10.3389/fgene.2013.00249.
7
A ranking index for quality assessment of forensic DNA profiles forensic DNA profiles.法医DNA图谱质量评估的排名指数 法医DNA图谱
BMC Res Notes. 2010 Nov 9;3:290. doi: 10.1186/1756-0500-3-290.
8
An information gap in DNA evidence interpretation.DNA 证据解读中的信息鸿沟。
PLoS One. 2009 Dec 16;4(12):e8327. doi: 10.1371/journal.pone.0008327.
9
Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays.使用高密度单核苷酸多态性(SNP)基因分型微阵列解析对高度复杂混合物贡献微量DNA的个体。
PLoS Genet. 2008 Aug 29;4(8):e1000167. doi: 10.1371/journal.pgen.1000167.
10
A graphical simulation model of the entire DNA process associated with the analysis of short tandem repeat loci.一个与短串联重复序列位点分析相关的整个DNA过程的图形模拟模型。
Nucleic Acids Res. 2005 Jan 28;33(2):632-43. doi: 10.1093/nar/gki205. Print 2005.