五个物种中不同的V1R基因库:在啮齿动物中扩增,在灵长类动物中减少,在狗中基因库小得出奇。
Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs.
作者信息
Young Janet M, Kambere Marijo, Trask Barbara J, Lane Robert P
机构信息
Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
出版信息
Genome Res. 2005 Feb;15(2):231-40. doi: 10.1101/gr.3339905. Epub 2005 Jan 14.
The V1R gene family comprises one of two types of putative pheromone receptors expressed in the mammalian vomeronasal organ (VNO). We searched the most recent mouse, rat, dog, chimpanzee, and human genome sequence assemblies to compile a near-complete repertoire of V1R genes for each species. Dog, human, and chimpanzee have very few intact V1Rs (8, 2, and 0, respectively) compared to more than a hundred intact V1Rs in each of the rat (106) and mouse (165) genomes. We also provide the first description of the diversity of V1R pseudogenes in these species. We identify at least 165 pseudogenes in mouse, 110 in rat, 102 in chimpanzee, 115 in human, and 54 in dog. Primate and dog pseudogenes are distributed among almost all V1R subfamilies seen in rodents, indicating that the common ancestor of these species had a diverse V1R repertoire. We find that V1R genes were subject to strikingly different fates in different species and in different subfamilies. In rodents, some subfamilies remained relatively stable or underwent roughly equivalent expansion in mouse and rat; other subfamilies expanded in one species but not the other. The small number of intact V1Rs in the dog genome is unexpected given the presumption that dogs, like rodents, have a functional VNO, and a complex system of pheromone-based behaviors. We identify an intact transient receptor potential channel 2beta in the dog genome, consistent with a functional VNO in dogs. The diminished V1R repertoire in dogs raises questions about the relative contributions of V1Rs versus other candidate pheromone receptor genes in the establishment of complex pheromone systems in mammals.
V1R基因家族是在哺乳动物犁鼻器(VNO)中表达的两种假定信息素受体类型之一。我们检索了最新的小鼠、大鼠、狗、黑猩猩和人类基因组序列组装结果,以编制每个物种近乎完整的V1R基因库。与大鼠(106个)和小鼠(165个)基因组中各自超过一百个完整的V1R相比,狗、人类和黑猩猩的完整V1R非常少(分别为8个、2个和0个)。我们还首次描述了这些物种中V1R假基因的多样性。我们在小鼠中鉴定出至少165个假基因,大鼠中110个,黑猩猩中102个,人类中115个,狗中54个。灵长类动物和狗的假基因分布在啮齿动物中可见的几乎所有V1R亚家族中,这表明这些物种共同的祖先拥有多样的V1R库。我们发现V1R基因在不同物种和不同亚家族中经历了截然不同的命运。在啮齿动物中,一些亚家族保持相对稳定,或者在小鼠和大鼠中经历了大致相当的扩增;其他亚家族在一个物种中扩增而在另一个物种中没有。鉴于狗像啮齿动物一样具有功能性VNO和基于信息素的复杂行为系统这一推测,狗基因组中完整V1R数量很少这一情况出人意料。我们在狗基因组中鉴定出一个完整的瞬时受体电位通道2β,这与狗具有功能性VNO是一致的。狗中V1R库的减少引发了关于V1R与其他候选信息素受体基因在哺乳动物复杂信息素系统建立中的相对贡献的问题。