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噬菌体T5的全基因组序列

Complete genome sequence of bacteriophage T5.

作者信息

Wang Jianbin, Jiang Yan, Vincent Myriam, Sun Yongqiao, Yu Hong, Wang Jing, Bao Qiyu, Kong Huimin, Hu Songnian

机构信息

James D. Watson Institute of Genome Sciences, Zhejiang University, Hangzhou 310008, China.

出版信息

Virology. 2005 Feb 5;332(1):45-65. doi: 10.1016/j.virol.2004.10.049.

Abstract

The 121,752-bp genome sequence of bacteriophage T5 was determined; the linear, double-stranded DNA is nicked in one of the strands and has large direct terminal repeats of 10,139 bp (8.3%) at both ends. The genome structure is consistently arranged according to its lytic life cycle. Of the 168 potential open reading frames (ORFs), 61 were annotated; these annotated ORFs are mainly enzymes involved in phage DNA replication, repair, and nucleotide metabolism. At least five endonucleases that believed to help inducing nicks in T5 genomic DNA, and a DNA ligase gene was found to be split into two separate ORFs. Analysis of T5 early promoters suggests a probable motif AAA{3, 4 T}nTTGCTT{17, 18 n}TATAATA{12, 13 W}{10 R} for strong promoters that may strengthen the step modification of host RNA polymerase, and thus control transcription of phage DNA. The distinct protein domain profile and a mosaic genome structure suggest an origin from the common genetic pool.

摘要

测定了噬菌体T5的121,752碱基对的基因组序列;线性双链DNA的一条链有切口,两端有10,139碱基对(8.3%)的大的正向末端重复序列。基因组结构根据其裂解生命周期持续排列。在168个潜在的开放阅读框(ORF)中,61个得到了注释;这些注释的ORF主要是参与噬菌体DNA复制、修复和核苷酸代谢的酶。发现至少有五种内切核酸酶被认为有助于在T5基因组DNA中引入切口,并且一个DNA连接酶基因被分成两个独立的ORF。对T5早期启动子的分析表明,对于强启动子可能存在一个可能的基序AAA{3, 4 T}nTTGCTT{17, 18 n}TATAATA{12, 13 W}{10 R},这可能会加强宿主RNA聚合酶的逐步修饰,从而控制噬菌体DNA的转录。独特的蛋白质结构域图谱和镶嵌基因组结构表明其起源于共同的基因库。

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