Suppr超能文献

氯儿茶酚1,2-双加氧酶的电子顺磁共振研究:催化过程中铁还原及两亲分子结合的证据

EPR studies of chlorocatechol 1,2-dioxygenase: evidences of iron reduction during catalysis and of the binding of amphipatic molecules.

作者信息

Citadini Ana P S, Pinto Andressa P A, Araújo Ana P U, Nascimento Otaciro R, Costa-Filho Antonio J

机构信息

Instituto de Física de São Carlos, Departamento de Física e Informática, Universidade de São Paulo, São Carlos, SP, Brazil.

出版信息

Biophys J. 2005 May;88(5):3502-8. doi: 10.1529/biophysj.104.055251. Epub 2005 Feb 18.

Abstract

Chlorocatechol 1,2-dioxygenase from Pseudomonas putida (Pp 1,2-CCD) is a dioxygenase responsible for ring cleavage during the degradation of recalcitrant aromatic compounds. We determined the zero-field splitting of the Fe(III) cofactor (|D| = 1.3 +/- 0.2 cm(-1)) by electron paramagnetic resonance (EPR) experiments that along with other structural data allowed us to infer the Fe(III) coordination environment. The EPR spectrum of the ion shows a significantly decrease of the g = 4.3 resonance upon substrate binding. This result is rationalized in terms of a mechanism previously proposed, where catechol substrate is activated by Fe(III), yielding an exchange-coupled Fe(II)-semiquinone (pair). The Pp 1,2-CCD capacity of binding amphipatic molecules and the effects of such binding on protein activity are also investigated. EPR spectra of spin labels show a protein-bound component, which was characterized by means of spectral simulations. Our results indicate that Pp 1,2-CCD is able to bind amphipatic molecules in a channel with the headgroup pointing outwards into the solvent, whereas the carbon chain is held inside the tunnel. Protein assays show that the enzyme activity is significantly lowered in the presence of stearic-acid molecules. The role of the binding of those molecules as an enzyme activity modulator is discussed.

摘要

恶臭假单胞菌的氯邻苯二酚1,2 -双加氧酶(Pp 1,2 - CCD)是一种双加氧酶,负责在难降解芳香化合物的降解过程中进行环裂解。我们通过电子顺磁共振(EPR)实验确定了Fe(III)辅因子的零场分裂(|D| = 1.3 +/- 0.2 cm(-1)),这些实验连同其他结构数据使我们能够推断Fe(III)的配位环境。该离子的EPR谱显示,底物结合后g = 4.3共振显著降低。根据先前提出的一种机制对该结果进行了合理解释,即邻苯二酚底物被Fe(III)激活,产生一个交换耦合的Fe(II)-半醌(对)。还研究了Pp 1,2 - CCD结合两亲分子的能力以及这种结合对蛋白质活性的影响。自旋标记的EPR谱显示出一个与蛋白质结合的组分,通过光谱模拟对其进行了表征。我们的结果表明,Pp 1,2 - CCD能够在一个通道中结合两亲分子,其头部基团指向溶剂,而碳链则保持在通道内部。蛋白质分析表明,在硬脂酸分子存在下,酶活性显著降低。讨论了这些分子的结合作为酶活性调节剂的作用。

相似文献

2
Role of cis-cis muconic acid in the catalysis of Pseudomonas putida chlorocatechol 1,2-dioxygenase.
Int J Biol Macromol. 2010 Aug 1;47(2):233-7. doi: 10.1016/j.ijbiomac.2010.04.016. Epub 2010 May 7.
3
Amphipatic molecules affect the kinetic profile of Pseudomonas putida chlorocatechol 1,2-dioxygenase.
Eur Biophys J. 2013 Aug;42(8):655-60. doi: 10.1007/s00249-013-0914-0. Epub 2013 Jun 11.
5
Catechol 1,2-dioxygenase from Pseudomonas putida in organic media--an electron paramagnetic resonance study.
Int J Biol Macromol. 2003 Nov;33(1-3):101-6. doi: 10.1016/s0141-8130(03)00073-4.
8
The Fe(II)/α-ketoglutarate-dependent taurine dioxygenases from Pseudomonas putida and Escherichia coli are tetramers.
FEBS J. 2012 Mar;279(5):816-31. doi: 10.1111/j.1742-4658.2012.08473.x. Epub 2012 Jan 24.

引用本文的文献

1
The two sides of a lipid-protein story.
Biophys Rev. 2016 Jun;8(2):179-191. doi: 10.1007/s12551-016-0199-5. Epub 2016 Apr 30.
2
Amphipatic molecules affect the kinetic profile of Pseudomonas putida chlorocatechol 1,2-dioxygenase.
Eur Biophys J. 2013 Aug;42(8):655-60. doi: 10.1007/s00249-013-0914-0. Epub 2013 Jun 11.
3
Crystallization and preliminary X-ray diffraction analysis of recombinant chlorocatechol 1,2-dioxygenase from Pseudomonas putida.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Apr 1;67(Pt 4):507-9. doi: 10.1107/S174430911100635X. Epub 2011 Mar 30.
4
Defects in vesicle core induced by escherichia coli dihydroorotate dehydrogenase.
Biophys J. 2008 Mar 1;94(5):1746-53. doi: 10.1529/biophysj.107.120055. Epub 2007 Nov 9.
5
Spin concentration measurements of high-spin (g' = 4.3) rhombic iron(III) ions in biological samples: theory and application.
J Biol Inorg Chem. 2008 Jan;13(1):15-24. doi: 10.1007/s00775-007-0304-0. Epub 2007 Oct 12.

本文引用的文献

1
Crystal structure of 4-chlorocatechol 1,2-dioxygenase from the chlorophenol-utilizing gram-positive Rhodococcus opacus 1CP.
J Biol Chem. 2004 Jun 25;279(26):27646-55. doi: 10.1074/jbc.M401692200. Epub 2004 Apr 1.
2
Lipid-gramicidin interactions: dynamic structure of the boundary lipid by 2D-ELDOR.
Biophys J. 2003 May;84(5):3364-78. doi: 10.1016/S0006-3495(03)70060-5.
3
Geometric and electronic structure/function correlations in non-heme iron enzymes.
Chem Rev. 2000 Jan 12;100(1):235-350. doi: 10.1021/cr9900275.
4
Oxygenases: mechanisms and structural motifs for O(2) activation.
Curr Opin Chem Biol. 2001 Oct;5(5):550-5. doi: 10.1016/s1367-5931(00)00236-2.
6
Influence of the histidine tail on the structure and activity of recombinant chlorocatechol 1,2-dioxygenase.
Biochem Biophys Res Commun. 2000 Jun 7;272(2):480-4. doi: 10.1006/bbrc.2000.2802.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验