Citadini Ana P S, Pinto Andressa P A, Araújo Ana P U, Nascimento Otaciro R, Costa-Filho Antonio J
Instituto de Física de São Carlos, Departamento de Física e Informática, Universidade de São Paulo, São Carlos, SP, Brazil.
Biophys J. 2005 May;88(5):3502-8. doi: 10.1529/biophysj.104.055251. Epub 2005 Feb 18.
Chlorocatechol 1,2-dioxygenase from Pseudomonas putida (Pp 1,2-CCD) is a dioxygenase responsible for ring cleavage during the degradation of recalcitrant aromatic compounds. We determined the zero-field splitting of the Fe(III) cofactor (|D| = 1.3 +/- 0.2 cm(-1)) by electron paramagnetic resonance (EPR) experiments that along with other structural data allowed us to infer the Fe(III) coordination environment. The EPR spectrum of the ion shows a significantly decrease of the g = 4.3 resonance upon substrate binding. This result is rationalized in terms of a mechanism previously proposed, where catechol substrate is activated by Fe(III), yielding an exchange-coupled Fe(II)-semiquinone (pair). The Pp 1,2-CCD capacity of binding amphipatic molecules and the effects of such binding on protein activity are also investigated. EPR spectra of spin labels show a protein-bound component, which was characterized by means of spectral simulations. Our results indicate that Pp 1,2-CCD is able to bind amphipatic molecules in a channel with the headgroup pointing outwards into the solvent, whereas the carbon chain is held inside the tunnel. Protein assays show that the enzyme activity is significantly lowered in the presence of stearic-acid molecules. The role of the binding of those molecules as an enzyme activity modulator is discussed.
恶臭假单胞菌的氯邻苯二酚1,2 -双加氧酶(Pp 1,2 - CCD)是一种双加氧酶,负责在难降解芳香化合物的降解过程中进行环裂解。我们通过电子顺磁共振(EPR)实验确定了Fe(III)辅因子的零场分裂(|D| = 1.3 +/- 0.2 cm(-1)),这些实验连同其他结构数据使我们能够推断Fe(III)的配位环境。该离子的EPR谱显示,底物结合后g = 4.3共振显著降低。根据先前提出的一种机制对该结果进行了合理解释,即邻苯二酚底物被Fe(III)激活,产生一个交换耦合的Fe(II)-半醌(对)。还研究了Pp 1,2 - CCD结合两亲分子的能力以及这种结合对蛋白质活性的影响。自旋标记的EPR谱显示出一个与蛋白质结合的组分,通过光谱模拟对其进行了表征。我们的结果表明,Pp 1,2 - CCD能够在一个通道中结合两亲分子,其头部基团指向溶剂,而碳链则保持在通道内部。蛋白质分析表明,在硬脂酸分子存在下,酶活性显著降低。讨论了这些分子的结合作为酶活性调节剂的作用。