Suppr超能文献

DNA反离子诱导单链折叠转变的介电控制

Dielectric control of counterion-induced single-chain folding transition of DNA.

作者信息

Baigl Damien, Yoshikawa Kenichi

机构信息

Department of Physics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.

出版信息

Biophys J. 2005 May;88(5):3486-93. doi: 10.1529/biophysj.105.059493. Epub 2005 Mar 4.

Abstract

In the presence of condensing agents, single chains of giant double-stranded DNA undergo a first-order phase transition between an elongated coil state and a folded compact state. To connect this like-charged attraction phenomenon to counterion condensation, we performed a series of single-chain experiments on aqueous solutions of DNA, where we varied the extent of counterion condensation by varying the relative dielectric constant epsilon(r) from 80 to 170. Single-chain observations of changes in the conformation of giant DNA were performed by transmission electron microscopy and fluorescence microscopy, with tetravalent spermine (SPM(4+)) as a condensing agent. At a fixed dielectric constant, single DNA chains fold into a compact state upon the addition of spermine, whereas at a constant spermine concentration single DNA chains unfold with an increase in epsilon(r). In both cases, the transition is largely discrete at the level of single chains. We found that the critical concentration of spermine necessary to induce the single-chain folding transition increases exponentially as the dielectric constant increases, corresponding to 87-88% of the DNA charge neutralized at the onset of the transition. We also observed that the toroidal morphology of compact DNA partially unfolds when epsilon(r) is increased.

摘要

在凝聚剂存在的情况下,巨大双链DNA的单链会在伸长的线圈状态和折叠的紧密状态之间经历一级相变。为了将这种同电荷吸引现象与抗衡离子凝聚联系起来,我们对DNA水溶液进行了一系列单链实验,通过将相对介电常数ε(r)从80改变到170来改变抗衡离子凝聚的程度。以四价精胺(SPM(4+))作为凝聚剂,通过透射电子显微镜和荧光显微镜对巨大DNA构象变化进行单链观察。在固定介电常数下,加入精胺后单条DNA链会折叠成紧密状态,而在精胺浓度恒定的情况下,单条DNA链会随着ε(r)的增加而展开。在这两种情况下,单链水平上的转变在很大程度上是离散的。我们发现,诱导单链折叠转变所需的精胺临界浓度随着介电常数的增加呈指数增长,对应于转变开始时87 - 88%的DNA电荷被中和。我们还观察到,当ε(r)增加时,紧密DNA的环形形态会部分展开。

相似文献

5
DNA condensation in two dimensions.二维DNA凝聚
Proc Natl Acad Sci U S A. 2000 Dec 19;97(26):14046-51. doi: 10.1073/pnas.97.26.14046.
6
Interplay between folding/unfolding and helix/coil transitions in giant DNA.
Biomacromolecules. 2000 Winter;1(4):597-603. doi: 10.1021/bm0055403.
9
How are small ions involved in the compaction of DNA molecules?小离子如何参与DNA分子的压缩?
Colloids Surf B Biointerfaces. 2007 Apr 15;56(1-2):126-33. doi: 10.1016/j.colsurfb.2006.10.040. Epub 2006 Nov 2.

引用本文的文献

9
A new view of the bacterial cytosol environment.细菌胞质溶胶环境的新视角。
PLoS Comput Biol. 2011 Jun;7(6):e1002066. doi: 10.1371/journal.pcbi.1002066. Epub 2011 Jun 9.

本文引用的文献

4
Lamellar phase of stacked two-dimensional rafts of actin filaments.肌动蛋白丝二维堆叠筏的片层相。
Phys Rev Lett. 2003 Jul 4;91(1):018103. doi: 10.1103/PhysRevLett.91.018103. Epub 2003 Jul 2.
5
Fluid dynamics: Vortex rings in a constant electric field.
Nature. 2003 Jul 17;424(6946):267-8. doi: 10.1038/424267b.
6
Counterion distribution around DNA probed by solution X-ray scattering.通过溶液X射线散射探测DNA周围的抗衡离子分布。
Phys Rev Lett. 2003 May 9;90(18):188103. doi: 10.1103/PhysRevLett.90.188103. Epub 2003 May 8.
9
Large discrete transition in a single DNA molecule appears continuous in the ensemble.
Phys Rev Lett. 1996 Apr 15;76(16):3029-3031. doi: 10.1103/PhysRevLett.76.3029.
10
Effect of glycine on DNA structural transitions induced by multivalent cationic compounds.
J Biomol Struct Dyn. 1997 Aug;15(1):53-61. doi: 10.1080/07391102.1997.10508945.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验