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蛋白质结构与动力学的核磁共振研究。

NMR studies of protein structure and dynamics.

作者信息

Kay Lewis E

机构信息

Contribution from the Protein Engineering Network Centers of Excellence and the Department of Medical Genetics, The University of Toronto, Toronto, Ont., Canada M5S 1A8.

出版信息

J Magn Reson. 2005 Apr;173(2):193-207. doi: 10.1016/j.jmr.2004.11.021.

Abstract

Recent advances in solution NMR spectroscopy have significantly extended the spectrum of problems that can now be addressed with this technology. In particular, studies of proteins with molecular weights on the order of 100 kDa are now possible at a level of detail that was previously reserved for much smaller systems. An example of the sort of information that is now accessible is provided in a study of malate synthase G, a 723 residue enzyme that has been a focal point of research efforts in my laboratory. Details of the labeling schemes that have been employed and optimal experiments for extraction of structural and dynamics information on this protein are described. NMR studies of protein dynamics, in principle, give insight into the relation between motion and function. A description of deuterium-based spin relaxation methods for the investigation of side chain dynamics is provided. Examples where millisecond (ms) time scale dynamics play an important role and where relaxation dispersion NMR spectroscopy has been particularly informative, including applications involving the membrane enzyme PagP and mutants of the Fyn SH3 domain that fold on a ms time scale, are presented.

摘要

溶液核磁共振波谱技术的最新进展显著拓宽了该技术目前能够解决的问题范围。特别是,现在能够以之前仅适用于小得多的系统的详细程度,对分子量约为100 kDa的蛋白质进行研究。在对苹果酸合酶G的一项研究中提供了目前可获取的这类信息的一个例子,苹果酸合酶G是一种含有723个残基的酶,一直是我实验室研究工作的重点。文中描述了所采用的标记方案的细节以及用于提取该蛋白质结构和动力学信息的最佳实验。原则上,蛋白质动力学的核磁共振研究能够深入了解运动与功能之间的关系。本文提供了用于研究侧链动力学的基于氘的自旋弛豫方法的描述。还展示了毫秒(ms)时间尺度动力学发挥重要作用以及弛豫色散核磁共振波谱特别有信息量的例子,包括涉及膜酶PagP和在毫秒时间尺度上折叠的Fyn SH3结构域突变体的应用。

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