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肌红蛋白突变体L29W中的配体迁移和蛋白质波动

Ligand migration and protein fluctuations in myoglobin mutant L29W.

作者信息

Nienhaus Karin, Ostermann Andreas, Nienhaus G Ulrich, Parak Fritz G, Schmidt Marius

机构信息

Department of Biophysics, University of Ulm, Albert-Einstein-Allee 11, 89081 Ulm, Germany.

出版信息

Biochemistry. 2005 Apr 5;44(13):5095-105. doi: 10.1021/bi047513t.

Abstract

We have determined eight X-ray structures of myoglobin mutant L29W at various experimental conditions. In addition, infrared spectroscopic experiments are presented, which are discussed in the light of the X-ray structures. Two distinct conformations of the CO-ligated protein were identified, giving rise to two stretching bands of heme-bound CO. If L29W MbCO crystals are illuminated around 180 K, a deoxy species is formed. The CO molecules migrate to the proximal side of the heme and remain trapped in the so-called Xe1 cavity upon temperature decrease to 105 K. The structure of this photoproduct is almost identical to the equilibrium high-temperature deoxy Mb structure. If the temperature is cycled to increasingly higher values, CO recombination is observed. Three intermediate structures have been determined during the rebinding process. Efficient recombination occurs only above 180 K, the characteristic temperature for the onset of protein dynamics. Rebinding is remarkably slow because bulky residues His64 and Trp29 block important migration pathways of the CO molecule.

摘要

我们已经在不同实验条件下测定了肌红蛋白突变体L29W的八个X射线结构。此外,还展示了红外光谱实验,并根据X射线结构进行了讨论。鉴定出了CO连接蛋白的两种不同构象,产生了血红素结合CO的两个伸缩带。如果在180 K左右照射L29W MbCO晶体,会形成一种脱氧物种。CO分子迁移到血红素的近端,在温度降至105 K时被困在所谓的Xe1腔中。这种光产物的结构几乎与平衡高温脱氧Mb结构相同。如果将温度循环到越来越高的值,会观察到CO重组。在重新结合过程中确定了三种中间结构。只有在高于180 K时才会发生高效重组,180 K是蛋白质动力学开始的特征温度。重新结合非常缓慢,因为庞大的残基His64和Trp29阻碍了CO分子的重要迁移途径。

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