Hunyadi Viktória, Chrétien Denis, Jánosi Imre M
Department of Physics of Complex Systems, Eötvös University, Pázmány Péter sétany 1/A, H-1117, Hungary.
J Mol Biol. 2005 May 13;348(4):927-38. doi: 10.1016/j.jmb.2005.03.019.
Microtubules assembled in vitro from pure tubulin can switch occasionally from growing to shrinking states or resume assembly, an unusual behavior termed "dynamic instability of microtubule growth". Its origin remains unclear and several models have been proposed, including occasional switching of the microtubules into energetically unfavorable configurations during assembly. In this study, we have asked whether the excess energy accumulated in these configurations would be of sufficient magnitude to destabilize the capping region that must exist at the end of growing microtubules. For this purpose, we have analyzed the frequency distribution of microtubules assembled in vitro from pure tubulin, and modeled the different mechanical constraints accumulated in their wall. We find that the maximal excess energy that the microtubule lattice can store is in the order of 11 kBT per dimer. Configurations that require distortions up to approximately 20 kBT are allowed at the expense of a slight conformational change, and larger distortions are not observed. Modeling of the different elastic deformations suggests that the excess energy is essentially induced by protofilament skewing, microtubule radial curvature change and inter-subunit shearing, distortions that must destabilize further the tubulin subunits interactions. These results are consistent with the hypothesis that unfavorable closure events may trigger the catastrophes observed at low tubulin concentration in vitro. In addition, we propose a novel type of representation that describes the stability of microtubule assembly systems, and which might be of considerable interest to study the effects of stabilizing and destabilizing factors on microtubule structure and dynamics.
由纯微管蛋白在体外组装而成的微管偶尔会从生长状态转变为收缩状态,或者恢复组装,这种异常行为被称为“微管生长的动态不稳定性”。其起源尚不清楚,人们已经提出了几种模型,包括微管在组装过程中偶尔转变为能量上不利的构型。在本研究中,我们探讨了在这些构型中积累的多余能量是否足以破坏生长中的微管末端必定存在的封端区域的稳定性。为此,我们分析了由纯微管蛋白在体外组装的微管的频率分布,并对其管壁中积累的不同机械约束进行了建模。我们发现,微管晶格能够存储的最大多余能量约为每二聚体11kBT。以轻微的构象变化为代价,允许出现高达约20kBT扭曲的构型,而未观察到更大的扭曲。对不同弹性变形的建模表明,多余能量主要是由原纤维倾斜、微管径向曲率变化和亚基间剪切引起的,这些扭曲必定会进一步破坏微管蛋白亚基间的相互作用。这些结果与以下假设一致,即不利的封闭事件可能会引发在体外微管蛋白浓度较低时观察到的灾变。此外,我们提出了一种新型的表示方法,用于描述微管组装系统的稳定性,这对于研究稳定和不稳定因素对微管结构和动力学的影响可能具有相当大的意义。