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丝虫寄生虫班氏吴策线虫谷胱甘肽S-转移酶的结构:抗成虫药物开发的靶点

Structure of glutathione S-transferase of the filarial parasite Wuchereria bancrofti: a target for drug development against adult worm.

作者信息

Nathan Sivaramakrishnan Thirumalai, Mathew Nisha, Kalyanasundaram Muthuswami, Balaraman Kothandapani

机构信息

Vector Control Research Centre, Indian Council of Medical Research, Indira Nagar, Pondicherry, 605006, India.

出版信息

J Mol Model. 2005 Jun;11(3):194-9. doi: 10.1007/s00894-005-0234-0. Epub 2005 Apr 29.

Abstract

A three dimensional structural model of Glutathione-S-transferase (GST) of the lymphatic filarial parasite Wuchereria bancrofti (wb) was constructed by homology modeling. The three dimensional X-ray crystal structure of porcine pi-class GST with PDB ID: 2gsr-A chain protein with 42% sequential and functional homology was used as the template. The model of wbGST built by MODELLER6v2 was analyzed by the PROCHECK programs. Ramachandran plot analysis showed that 93.5% of the residues are in the core region followed by 5.4 and 1.1% residues in the allowed and generously allowed regions, respectively. None of the non-glycine residues is in disallowed regions. The PROSA II z-score and the energy graph for the final model further confirmed the quality of the modeled structure. The computationally modeled three-dimensional (3D) structure of wbGST has been submitted to the Protein Data Bank (PDB) (PDB ID: 1SFM and RCSB ID: RCSB021668). 1SFM was used for docking with GST inhibitors by Hex4.2 macromolecular docking using spherical polar Fourier correlations.

摘要

通过同源建模构建了淋巴丝虫寄生虫班氏吴策线虫(Wuchereria bancrofti,wb)谷胱甘肽 - S - 转移酶(GST)的三维结构模型。以PDB ID为2gsr - A链蛋白的猪π类GST的三维X射线晶体结构为模板,其具有42%的序列和功能同源性。由MODELLER6v2构建的wbGST模型通过PROCHECK程序进行分析。拉氏图分析表明,93.5%的残基位于核心区域,其次分别有5.4%和1.1%的残基位于允许区域和宽松允许区域。没有非甘氨酸残基位于不允许区域。最终模型的PROSA II z分数和能量图进一步证实了建模结构的质量。计算建模的wbGST三维(3D)结构已提交至蛋白质数据库(PDB)(PDB ID:1SFM和RCSB ID:RCSB021668)。使用Hex4.2通过球形极坐标傅里叶相关性进行大分子对接,将1SFM用于与GST抑制剂对接。

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