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拟南芥脂肪酶的同源建模预测三维结构。

Three-Dimensional Structure of Arabidopsis thaliana Lipase Predicted by Homology Modeling Method.

机构信息

Unité de Protéomie Fonctionnelle and Biopréservation Alimentaire, Institut Supérieur des Sciences Biologiques Appliquées de Tunis, Université Tunis El Manar, Tunisie.

出版信息

Evol Bioinform Online. 2011;7:99-105. doi: 10.4137/EBO.S7122. Epub 2011 Jun 28.

DOI:10.4137/EBO.S7122
PMID:21792274
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3140413/
Abstract

Triacylglycerol lipases have been thoroughly characterized in mammals and microorganisms. By contrast, very little is known about plant lipases. In this investigation, a homology model of Arabidopsis thaliana lipase (NP_179126) was constructed using a human gastric lipase (PDB ID: 1HLG), as a template for model building. This model was then assessed for stereochemical quality and side chain environment. Natural substrates: tributyrin, trioctanoin and triolen were docked into the model to investigate ligand-substrate interaction.

摘要

三酰基甘油脂肪酶在哺乳动物和微生物中得到了深入的研究。相比之下,关于植物脂肪酶的了解则非常有限。在这项研究中,使用人类胃脂肪酶(PDB ID:1HLG)作为模板,构建了拟南芥脂肪酶(NP_179126)的同源模型。然后,对该模型的立体化学质量和侧链环境进行了评估。将天然底物:丁酸三酯、辛酸三酯和三油酸酯对接入模型中,以研究配体-底物相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/3ba468b65e7e/ebo-7-2011-099f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/378ef63cb69e/ebo-7-2011-099f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/287d840b6e6f/ebo-7-2011-099f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/9a26d3e60a99/ebo-7-2011-099f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/5d43bcec741a/ebo-7-2011-099f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/3ba468b65e7e/ebo-7-2011-099f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/378ef63cb69e/ebo-7-2011-099f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/287d840b6e6f/ebo-7-2011-099f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/9a26d3e60a99/ebo-7-2011-099f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/5d43bcec741a/ebo-7-2011-099f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d1f/3140413/3ba468b65e7e/ebo-7-2011-099f5.jpg

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