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VECT:一款面向非程序员的自动可视化Perl编程工具。

VECT: an automatic visual Perl programming tool for nonprogrammers.

作者信息

Chou Hui-Hsien

机构信息

Department of Genetics, Development and Cell Biology and Computer Science, Iowa State University, Ames, IA 50011, USA.

出版信息

Biotechniques. 2005 Apr;38(4):615-21. doi: 10.2144/05384RR02.

Abstract

Modern high-throughput biological research produces enormous amount of data that must be processed by computers, but many biologists dealing with these data are not professional programmers. Despite increased awareness of interdisciplinary training in bioinformatics, many biologists still find it difficult to create their own computational solutions. VECT, the Visual Extraction and Conversion Tool, has been developed to assist nonprogrammers to create simple bioinformatics without having to master a programming language. VECT provides a unified graphical user interface for data extraction, data conversion, output composition, and Perl code generation. Programming using VECT is achieved by visually performing the desired data extraction, conversion, and output composition tasks using some sample user data. These tasks are then compiled by VECT into an executable Perl program, which can be saved for later use and can carry out the same computation independently of VECT. VECT is released under the GNU General Public License and is freely available for all major computing platforms including Macintosh OS X, Linux, and Microsoft Windows at www.complex.iastate.edu.

摘要

现代高通量生物学研究产生了海量数据,这些数据必须由计算机进行处理,但许多处理这些数据的生物学家并非专业程序员。尽管人们对生物信息学跨学科培训的认识有所提高,但许多生物学家仍然发现创建自己的计算解决方案很困难。可视化提取与转换工具(VECT)已被开发出来,以帮助非程序员创建简单的生物信息学工具,而无需掌握编程语言。VECT为数据提取、数据转换、输出合成和Perl代码生成提供了一个统一的图形用户界面。使用VECT进行编程是通过使用一些示例用户数据直观地执行所需的数据提取、转换和输出合成任务来实现的。然后,VECT将这些任务编译成一个可执行的Perl程序,该程序可以保存以供以后使用,并且可以独立于VECT执行相同的计算。VECT根据GNU通用公共许可证发布,可在www.complex.iastate.edu上免费获取,适用于包括Macintosh OS X、Linux和Microsoft Windows在内的所有主流计算平台。

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