基因组图：一个用于可视化大规模基因组数据的Python包。
GenomeDiagram: a python package for the visualization of large-scale genomic data.
作者信息
Pritchard Leighton, White Jennifer A, Birch Paul R J, Toth Ian K
机构信息
Plant Pathogen Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, Scotland, UK.
出版信息
Bioinformatics. 2006 Mar 1;22(5):616-7. doi: 10.1093/bioinformatics/btk021. Epub 2005 Dec 23.
UNLABELLED
We present GenomeDiagram, a flexible, open-source Python module for the visualization of large-scale genomic, comparative genomic and other data with reference to a single chromosome or other biological sequence. GenomeDiagram may be used to generate publication-quality vector graphics, rastered images and in-line streamed graphics for webpages. The package integrates with datatypes from the BioPython project, and is available for Windows, Linux and Mac OS X systems.
AVAILABILITY
GenomeDiagram is freely available as source code (under GNU Public License) at http://bioinf.scri.ac.uk/lp/programs.html, and requires Python 2.3 or higher, and recent versions of the ReportLab and BioPython packages.
SUPPLEMENTARY INFORMATION
A user manual, example code and images are available at http://bioinf.scri.ac.uk/lp/programs.html.
未标注
我们展示了GenomeDiagram，这是一个灵活的开源Python模块，用于参照单条染色体或其他生物序列对大规模基因组、比较基因组及其他数据进行可视化。GenomeDiagram可用于生成适用于出版物的高质量矢量图形、光栅图像以及用于网页的内联流式图形。该软件包与BioPython项目的数据类型集成，适用于Windows、Linux和Mac OS X系统。
可用性
GenomeDiagram可在http://bioinf.scri.ac.uk/lp/programs.html上免费获取源代码（遵循GNU公共许可证），需要Python 2.3或更高版本，以及最新版本的ReportLab和BioPython软件包。
补充信息
用户手册、示例代码和图像可在http://bioinf.scri.ac.uk/lp/programs.html上获取。
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