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嗜热古菌深渊热球菌可能需要DNA聚合酶D和B来进行DNA复制。

The hyperthermophilic euryarchaeota Pyrococcus abyssi likely requires the two DNA polymerases D and B for DNA replication.

作者信息

Henneke Ghislaine, Flament Didier, Hübscher Ulrich, Querellou Joël, Raffin Jean-Paul

机构信息

IFREMER, UMR 6197, Laboratoire de Microbiologie et Environnements Extrêmes, DRV/VP/LM2E, BP 70, F-29280 Plouzané, France.

出版信息

J Mol Biol. 2005 Jul 1;350(1):53-64. doi: 10.1016/j.jmb.2005.04.042.

Abstract

DNA polymerases carry out DNA synthesis during DNA replication, DNA recombination and DNA repair. During the past five years, the number of DNA polymerases in both eukarya and bacteria has increased to at least 19 and multiple biological roles have been assigned to many DNA polymerases. Archaea, the third domain of life, on the other hand, have only a subset of the eukaryotic-like DNA polymerases. The diversity among the archaeal DNA polymerases poses the intriguing question of their functional tasks. Here, we focus on the two identified DNA polymerases, the family B DNA polymerase B (PabpolB) and the family D DNA polymerase D (PabpolD) from the hyperthermophilic euryarchaeota Pyrococcus abyssi. Our data can be summarized as follows: (i) both Pabpols are DNA polymerizing enzymes exclusively; (ii) their DNA binding properties as tested in gel shift competition assays indicated that PabpolD has a preference for a primed template; (iii) PabPolD is a primer-directed DNA polymerase independently of the primer composition whereas PabpolB behaves as an exclusively DNA primer-directed DNA polymerase; (iv) PabPCNA is required for PabpolD to perform efficient DNA synthesis but not PabpolB; (v) PabpolD, but not PabpolB, contains strand displacement activity; (vii) in the presence of PabPCNA, however, both Pabpols D and B show strand displacement activity; and (viii) we show that the direct interaction between PabpolD and PabPCNA is DNA-dependent. Our data imply that PabPolD might play an important role in DNA replication likely together with PabpolB, suggesting that archaea require two DNA polymerases at the replication fork.

摘要

DNA聚合酶在DNA复制、DNA重组和DNA修复过程中进行DNA合成。在过去五年中,真核生物和细菌中的DNA聚合酶数量已增加到至少19种,并且许多DNA聚合酶被赋予了多种生物学功能。另一方面,古细菌作为生命的第三个域,仅拥有一部分类似真核生物的DNA聚合酶。古细菌DNA聚合酶之间的多样性引发了关于其功能任务的有趣问题。在这里,我们重点关注从嗜热广古菌深渊火球菌中鉴定出的两种DNA聚合酶,即B族DNA聚合酶B(PabpolB)和D族DNA聚合酶D(PabpolD)。我们的数据可以总结如下:(i)两种Pabpols均仅是DNA聚合酶;(ii)在凝胶迁移竞争试验中测试的它们的DNA结合特性表明,PabpolD对带引物的模板具有偏好性;(iii)PabPolD是一种引物导向的DNA聚合酶,与引物组成无关,而PabpolB仅作为一种DNA引物导向的DNA聚合酶;(iv)PabPCNA是PabpolD进行高效DNA合成所必需的,但不是PabpolB所必需的;(v)PabpolD具有链置换活性,而PabpolB没有;(vii)然而,在存在PabPCNA的情况下,Pabpols D和B均显示出链置换活性;并且(viii)我们表明PabpolD与PabPCNA之间的直接相互作用是依赖于DNA的。我们的数据表明,PabPolD可能与PabpolB一起在DNA复制中发挥重要作用,这表明古细菌在复制叉处需要两种DNA聚合酶。

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