• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

嗜热古菌深渊热球菌可能需要DNA聚合酶D和B来进行DNA复制。

The hyperthermophilic euryarchaeota Pyrococcus abyssi likely requires the two DNA polymerases D and B for DNA replication.

作者信息

Henneke Ghislaine, Flament Didier, Hübscher Ulrich, Querellou Joël, Raffin Jean-Paul

机构信息

IFREMER, UMR 6197, Laboratoire de Microbiologie et Environnements Extrêmes, DRV/VP/LM2E, BP 70, F-29280 Plouzané, France.

出版信息

J Mol Biol. 2005 Jul 1;350(1):53-64. doi: 10.1016/j.jmb.2005.04.042.

DOI:10.1016/j.jmb.2005.04.042
PMID:15922358
Abstract

DNA polymerases carry out DNA synthesis during DNA replication, DNA recombination and DNA repair. During the past five years, the number of DNA polymerases in both eukarya and bacteria has increased to at least 19 and multiple biological roles have been assigned to many DNA polymerases. Archaea, the third domain of life, on the other hand, have only a subset of the eukaryotic-like DNA polymerases. The diversity among the archaeal DNA polymerases poses the intriguing question of their functional tasks. Here, we focus on the two identified DNA polymerases, the family B DNA polymerase B (PabpolB) and the family D DNA polymerase D (PabpolD) from the hyperthermophilic euryarchaeota Pyrococcus abyssi. Our data can be summarized as follows: (i) both Pabpols are DNA polymerizing enzymes exclusively; (ii) their DNA binding properties as tested in gel shift competition assays indicated that PabpolD has a preference for a primed template; (iii) PabPolD is a primer-directed DNA polymerase independently of the primer composition whereas PabpolB behaves as an exclusively DNA primer-directed DNA polymerase; (iv) PabPCNA is required for PabpolD to perform efficient DNA synthesis but not PabpolB; (v) PabpolD, but not PabpolB, contains strand displacement activity; (vii) in the presence of PabPCNA, however, both Pabpols D and B show strand displacement activity; and (viii) we show that the direct interaction between PabpolD and PabPCNA is DNA-dependent. Our data imply that PabPolD might play an important role in DNA replication likely together with PabpolB, suggesting that archaea require two DNA polymerases at the replication fork.

摘要

DNA聚合酶在DNA复制、DNA重组和DNA修复过程中进行DNA合成。在过去五年中,真核生物和细菌中的DNA聚合酶数量已增加到至少19种,并且许多DNA聚合酶被赋予了多种生物学功能。另一方面,古细菌作为生命的第三个域,仅拥有一部分类似真核生物的DNA聚合酶。古细菌DNA聚合酶之间的多样性引发了关于其功能任务的有趣问题。在这里,我们重点关注从嗜热广古菌深渊火球菌中鉴定出的两种DNA聚合酶,即B族DNA聚合酶B(PabpolB)和D族DNA聚合酶D(PabpolD)。我们的数据可以总结如下:(i)两种Pabpols均仅是DNA聚合酶;(ii)在凝胶迁移竞争试验中测试的它们的DNA结合特性表明,PabpolD对带引物的模板具有偏好性;(iii)PabPolD是一种引物导向的DNA聚合酶,与引物组成无关,而PabpolB仅作为一种DNA引物导向的DNA聚合酶;(iv)PabPCNA是PabpolD进行高效DNA合成所必需的,但不是PabpolB所必需的;(v)PabpolD具有链置换活性,而PabpolB没有;(vii)然而,在存在PabPCNA的情况下,Pabpols D和B均显示出链置换活性;并且(viii)我们表明PabpolD与PabPCNA之间的直接相互作用是依赖于DNA的。我们的数据表明,PabPolD可能与PabpolB一起在DNA复制中发挥重要作用,这表明古细菌在复制叉处需要两种DNA聚合酶。

相似文献

1
The hyperthermophilic euryarchaeota Pyrococcus abyssi likely requires the two DNA polymerases D and B for DNA replication.嗜热古菌深渊热球菌可能需要DNA聚合酶D和B来进行DNA复制。
J Mol Biol. 2005 Jul 1;350(1):53-64. doi: 10.1016/j.jmb.2005.04.042.
2
Intrinsic properties of the two replicative DNA polymerases of Pyrococcus abyssi in replicating abasic sites: possible role in DNA damage tolerance?深渊嗜热栖热菌的两种复制性DNA聚合酶在复制无碱基位点时的内在特性:在DNA损伤耐受中的可能作用?
Mol Microbiol. 2008 Nov;70(3):746-61. doi: 10.1111/j.1365-2958.2008.06446.x. Epub 2008 Sep 24.
3
Binding to PCNA in Euryarchaeal DNA Replication requires two PIP motifs for DNA polymerase D and one PIP motif for DNA polymerase B.在广古菌DNA复制过程中与增殖细胞核抗原(PCNA)结合,DNA聚合酶D需要两个增殖细胞核抗原相互作用基序(PIP基序),而DNA聚合酶B需要一个PIP基序。
J Mol Biol. 2009 Nov 27;394(2):209-18. doi: 10.1016/j.jmb.2009.09.044. Epub 2009 Sep 23.
4
DNA polymerase switching on homotrimeric PCNA at the replication fork of the euryarchaea Pyrococcus abyssi.在嗜热栖热放线菌复制叉处,DNA聚合酶开启同三聚体增殖细胞核抗原(PCNA)的功能。
J Mol Biol. 2007 Jun 1;369(2):343-55. doi: 10.1016/j.jmb.2007.03.054. Epub 2007 Mar 24.
5
Replication slippage of the thermophilic DNA polymerases B and D from the Euryarchaeota Pyrococcus abyssi.嗜热古菌 Pyrococcus abyssi 的 B 和 D 型 DNA 聚合酶的复制滑动。
Front Microbiol. 2014 Aug 7;5:403. doi: 10.3389/fmicb.2014.00403. eCollection 2014.
6
Interplay between DNA polymerase and proliferating cell nuclear antigen switches off base excision repair of uracil and hypoxanthine during replication in archaea.在古细菌复制过程中,DNA聚合酶与增殖细胞核抗原之间的相互作用会关闭尿嘧啶和次黄嘌呤的碱基切除修复。
J Mol Biol. 2008 Nov 21;383(4):762-71. doi: 10.1016/j.jmb.2008.08.018. Epub 2008 Aug 14.
7
The glycine-rich motif of Pyrococcus abyssi DNA polymerase D is critical for protein stability.Pyrococcus abyssi DNA 聚合酶 D 的富含甘氨酸基序对于蛋白质稳定性至关重要。
J Mol Biol. 2010 Mar 5;396(4):840-8. doi: 10.1016/j.jmb.2010.01.006. Epub 2010 Jan 11.
8
Molecular recognition of canonical and deaminated bases by P. abyssi family B DNA polymerase.深海栖热菌家族 B DNA 聚合酶对标准碱基和脱氨碱基的分子识别。
J Mol Biol. 2012 Oct 26;423(3):315-36. doi: 10.1016/j.jmb.2012.07.025. Epub 2012 Aug 16.
9
In vitro replication slippage by DNA polymerases from thermophilic organisms.嗜热生物的DNA聚合酶在体外的复制滑动
J Mol Biol. 2001 Sep 14;312(2):323-33. doi: 10.1006/jmbi.2001.4943.
10
Comprehensive search for DNA polymerase in the hyperthermophilic archaeon, Pyrococcus furiosus.对嗜热古菌激烈火球菌中DNA聚合酶的全面搜索。
Nucleosides Nucleotides Nucleic Acids. 2006;25(4-6):681-91. doi: 10.1080/15257770600686485.

引用本文的文献

1
Exploration of Comprehensive Structural and Functional Potential of Recombinant Proteins Using Cutting-Edge Bioinformatics Tools.使用前沿生物信息学工具探索重组蛋白的综合结构和功能潜力。
Appl Biochem Biotechnol. 2025 Sep 9. doi: 10.1007/s12010-025-05366-2.
2
Molecular basis for proofreading by the unique exonuclease domain of Family-D DNA polymerases.家族 D DNA 聚合酶独特的外切酶结构域校对的分子基础。
Nat Commun. 2023 Dec 14;14(1):8306. doi: 10.1038/s41467-023-44125-x.
3
Biological Mechanisms Induced by Soybean Agglutinin Using an Intestinal Cell Model of Monogastric Animals.
利用单胃动物肠道细胞模型研究大豆凝集素诱导的生物学机制
Front Vet Sci. 2021 Jun 2;8:639792. doi: 10.3389/fvets.2021.639792. eCollection 2021.
4
DNA polymerase D temporarily connects primase to the CMG-like helicase before interacting with proliferating cell nuclear antigen.DNA 聚合酶 D 在与增殖细胞核抗原相互作用之前,暂时将引物酶连接到 CMG 样解旋酶上。
Nucleic Acids Res. 2021 May 7;49(8):4599-4612. doi: 10.1093/nar/gkab243.
5
Anlotinib suppresses MLL-rearranged acute myeloid leukemia cell growth by inhibiting SETD1A/AKT-mediated DNA damage response.安罗替尼通过抑制SETD1A/AKT介导的DNA损伤反应来抑制MLL重排的急性髓系白血病细胞生长。
Am J Transl Res. 2021 Mar 15;13(3):1494-1504. eCollection 2021.
6
-a model archaeon for studying DNA replication and repair.一种研究 DNA 复制和修复的模式古菌。
Open Biol. 2020 Dec;10(12):200293. doi: 10.1098/rsob.200293. Epub 2020 Dec 2.
7
Novel ribonucleotide discrimination in the RNA polymerase-like two-barrel catalytic core of Family D DNA polymerases.家族 D DNA 聚合酶 RNA 聚合酶样双桶催化核心中的新型核苷酸判别。
Nucleic Acids Res. 2020 Dec 2;48(21):12204-12218. doi: 10.1093/nar/gkaa986.
8
Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy.低温电子显微镜揭示的 DNA 聚合酶 D-PCNA-DNA(古菌复制体复合物)的两种构象。
BMC Biol. 2020 Oct 28;18(1):152. doi: 10.1186/s12915-020-00889-y.
9
Diversity and evolution of B-family DNA polymerases.B 族 DNA 聚合酶的多样性与进化。
Nucleic Acids Res. 2020 Oct 9;48(18):10142-10156. doi: 10.1093/nar/gkaa760.
10
Role of RadA and DNA Polymerases in Recombination-Associated DNA Synthesis in Hyperthermophilic Archaea.超嗜热古菌中重组相关 DNA 合成中 RadA 和 DNA 聚合酶的作用。
Biomolecules. 2020 Jul 14;10(7):1045. doi: 10.3390/biom10071045.