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一种用于建立高通量纳升结晶实验的程序。用于初始筛选、自动存储、成像和优化的结晶工作流程。

A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization.

作者信息

Walter Thomas S, Diprose Jonathan M, Mayo Chris J, Siebold Christian, Pickford Mike G, Carter Lester, Sutton Geoff C, Berrow Nick S, Brown James, Berry Ian M, Stewart-Jones Guillaume B E, Grimes Jonathan M, Stammers David K, Esnouf Robert M, Jones E Yvonne, Owens Ray J, Stuart David I, Harlos Karl

机构信息

Oxford Protein Production Facility, Division of Structural Biology, Henry Wellcome Building for Genomic Medicine, Roosevelt Drive, Headington, Oxford OX3 7BN, England.

出版信息

Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):651-7. doi: 10.1107/S0907444905007808. Epub 2005 May 26.

DOI:10.1107/S0907444905007808
PMID:15930615
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7159505/
Abstract

Crystallization trials at the Division of Structural Biology in Oxford are now almost exclusively carried out using a high-throughput workflow implemented in the Oxford Protein Production Facility. Initial crystallization screening is based on nanolitre-scale sitting-drop vapour-diffusion experiments (typically 100 nl of protein plus 100 nl of reservoir solution per droplet) which use standard crystallization screening kits and 96-well crystallization plates. For 294 K crystallization trials the barcoded crystallization plates are entered into an automated storage system with a fully integrated imaging system. These plates are imaged in accordance with a pre-programmed schedule and the resulting digital data for each droplet are harvested into a laboratory information-management system (LIMS), scored by crystal recognition software and displayed for user analysis via a web-based interface. Currently, storage for trials at 277 K is not automated and for imaging the crystallization plates are fed by hand into an imaging system from which the data enter the LIMS. The workflow includes two procedures for nanolitre-scale optimization of crystallization conditions: (i) a protocol for variation of pH, reservoir dilution and protein:reservoir ratio and (ii) an additive screen. Experience based on 592 crystallization projects is reported.

摘要

牛津大学结构生物学部目前几乎完全采用牛津蛋白质生产设施中实施的高通量工作流程进行结晶试验。初始结晶筛选基于纳升规模的坐滴气相扩散实验(通常每个液滴含100纳升蛋白质加100纳升储液),该实验使用标准结晶筛选试剂盒和96孔结晶板。对于294K结晶试验,带有条形码的结晶板被放入一个带有完全集成成像系统的自动存储系统中。这些板按照预编程的时间表进行成像,每个液滴产生的数字数据被收集到实验室信息管理系统(LIMS)中,由晶体识别软件评分,并通过基于网络的界面显示以供用户分析。目前,277K试验的存储不是自动化的,对于成像,结晶板需手动送入成像系统,数据从该系统进入LIMS。该工作流程包括两个用于纳升规模结晶条件优化的程序:(i)pH值、储液稀释和蛋白质与储液比例变化的方案,以及(ii)添加剂筛选。报告了基于592个结晶项目的经验。