Suppr超能文献

一种用于建立高通量纳升结晶实验的程序。用于初始筛选、自动存储、成像和优化的结晶工作流程。

A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization.

作者信息

Walter Thomas S, Diprose Jonathan M, Mayo Chris J, Siebold Christian, Pickford Mike G, Carter Lester, Sutton Geoff C, Berrow Nick S, Brown James, Berry Ian M, Stewart-Jones Guillaume B E, Grimes Jonathan M, Stammers David K, Esnouf Robert M, Jones E Yvonne, Owens Ray J, Stuart David I, Harlos Karl

机构信息

Oxford Protein Production Facility, Division of Structural Biology, Henry Wellcome Building for Genomic Medicine, Roosevelt Drive, Headington, Oxford OX3 7BN, England.

出版信息

Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):651-7. doi: 10.1107/S0907444905007808. Epub 2005 May 26.

Abstract

Crystallization trials at the Division of Structural Biology in Oxford are now almost exclusively carried out using a high-throughput workflow implemented in the Oxford Protein Production Facility. Initial crystallization screening is based on nanolitre-scale sitting-drop vapour-diffusion experiments (typically 100 nl of protein plus 100 nl of reservoir solution per droplet) which use standard crystallization screening kits and 96-well crystallization plates. For 294 K crystallization trials the barcoded crystallization plates are entered into an automated storage system with a fully integrated imaging system. These plates are imaged in accordance with a pre-programmed schedule and the resulting digital data for each droplet are harvested into a laboratory information-management system (LIMS), scored by crystal recognition software and displayed for user analysis via a web-based interface. Currently, storage for trials at 277 K is not automated and for imaging the crystallization plates are fed by hand into an imaging system from which the data enter the LIMS. The workflow includes two procedures for nanolitre-scale optimization of crystallization conditions: (i) a protocol for variation of pH, reservoir dilution and protein:reservoir ratio and (ii) an additive screen. Experience based on 592 crystallization projects is reported.

摘要

牛津大学结构生物学部目前几乎完全采用牛津蛋白质生产设施中实施的高通量工作流程进行结晶试验。初始结晶筛选基于纳升规模的坐滴气相扩散实验(通常每个液滴含100纳升蛋白质加100纳升储液),该实验使用标准结晶筛选试剂盒和96孔结晶板。对于294K结晶试验,带有条形码的结晶板被放入一个带有完全集成成像系统的自动存储系统中。这些板按照预编程的时间表进行成像,每个液滴产生的数字数据被收集到实验室信息管理系统(LIMS)中,由晶体识别软件评分,并通过基于网络的界面显示以供用户分析。目前,277K试验的存储不是自动化的,对于成像,结晶板需手动送入成像系统,数据从该系统进入LIMS。该工作流程包括两个用于纳升规模结晶条件优化的程序:(i)pH值、储液稀释和蛋白质与储液比例变化的方案,以及(ii)添加剂筛选。报告了基于592个结晶项目的经验。

相似文献

2
Microscale vapour diffusion for protein crystallization.用于蛋白质结晶的微量气相扩散法。
Acta Crystallogr D Biol Crystallogr. 2007 Sep;63(Pt 9):1009-15. doi: 10.1107/S0907444907037857. Epub 2007 Aug 17.
3
Semi-automated microseeding of nanolitre crystallization experiments.纳升结晶实验的半自动微量接种
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jan 1;64(Pt 1):14-8. doi: 10.1107/S1744309107057260. Epub 2007 Dec 20.
7
Nanolitre-scale crystallization using acoustic liquid-transfer technology.采用声学液体转移技术的纳升规模结晶法。
Acta Crystallogr D Biol Crystallogr. 2012 Aug;68(Pt 8):893-900. doi: 10.1107/S0907444912016617. Epub 2012 Jul 17.
8
Development of a fully automated macromolecular crystallization/observation robotic system, HTS-80.全自动大分子结晶/观察机器人系统HTS-80的研发
Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):658-63. doi: 10.1107/S090744490500939X. Epub 2005 May 26.
9
Phoenito experiments: combining the strengths of commercial crystallization automation.Phoenito实验:结合商业结晶自动化的优势。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Nov 1;64(Pt 11):991-6. doi: 10.1107/S1744309108029667. Epub 2008 Oct 31.

引用本文的文献

8
The molecular basis of drug selectivity for α5 subunit-containing GABA receptors.含 α5 亚基 GABA 受体药物选择性的分子基础。
Nat Struct Mol Biol. 2023 Dec;30(12):1936-1946. doi: 10.1038/s41594-023-01133-1. Epub 2023 Oct 30.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验