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A minor fraction of base J in kinetoplastid nuclear DNA is bound by the J-binding protein 1.

作者信息

Toaldo Cristiane Bentin, Kieft Rudo, Dirks-Mulder Anita, Sabatini Robert, van Luenen Henri G A M, Borst Piet

机构信息

The Netherlands Cancer Institute, Division of Molecular Biology and Centre of Biomedical Genetics, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.

出版信息

Mol Biochem Parasitol. 2005 Sep;143(1):111-5. doi: 10.1016/j.molbiopara.2005.05.001.

DOI:10.1016/j.molbiopara.2005.05.001
PMID:15935489
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10278234/
Abstract
摘要

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1
A minor fraction of base J in kinetoplastid nuclear DNA is bound by the J-binding protein 1.动质体核DNA中一小部分的碱基J与J结合蛋白1结合。
Mol Biochem Parasitol. 2005 Sep;143(1):111-5. doi: 10.1016/j.molbiopara.2005.05.001.
2
The modified base J is the target for a novel DNA-binding protein in kinetoplastid protozoans.修饰碱基J是动质体原生动物中一种新型DNA结合蛋白的作用靶点。
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3
Base J: discovery, biosynthesis, and possible functions.碱基J：发现、生物合成及其可能的功能。
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4
Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei.两种胸苷羟化酶在调控布氏冈比亚锥虫基因组中转录酶 II 多顺反子转录单位侧翼区域的糖基化 DNA 形成方面存在差异。
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5
Telomeric localization of the modified DNA base J in the genome of the protozoan parasite Leishmania.原生动物寄生虫利什曼原虫基因组中修饰的DNA碱基J的端粒定位。
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6
TbRAB23; a nuclear-associated Rab protein from Trypanosoma brucei.TbRAB23；一种来自布氏锥虫的与细胞核相关的Rab蛋白。
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7
Evolution of codon usage and base contents in kinetoplastid protozoans.动质体原生动物密码子使用情况及碱基含量的演变
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J-binding protein increases the level and retention of the unusual base J in trypanosome DNA.J结合蛋白可提高锥虫DNA中异常碱基J的水平及保留率。
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Base J glucosyltransferase does not regulate the sequence specificity of J synthesis in trypanosomatid telomeric DNA.碱基J葡糖基转移酶并不调控锥虫端粒DNA中J合成的序列特异性。
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Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing.使用单分子实时测序（SMRT测序）确定DNA中碱基J定位的序列要求。
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Identification of the glucosyltransferase that converts hydroxymethyluracil to base J in the trypanosomatid genome.在锥虫基因组中鉴定将羟甲基尿嘧啶转化为碱基J的葡糖基转移酶。
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Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.糖基化羟甲基尿嘧啶，DNA 碱基 J，可防止利什曼原虫中转录通读。
Cell. 2012 Aug 31;150(5):909-21. doi: 10.1016/j.cell.2012.07.030.
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The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1.JBP1 中新型 DNA 结合域识别含碱基 J 的 DNA 的结构基础。
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8
Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei.两种胸苷羟化酶在调控布氏冈比亚锥虫基因组中转录酶 II 多顺反子转录单位侧翼区域的糖基化 DNA 形成方面存在差异。
Nucleic Acids Res. 2010 Jul;38(12):3923-35. doi: 10.1093/nar/gkq146. Epub 2010 Mar 9.
9
JBP1 and JBP2 are two distinct thymidine hydroxylases involved in J biosynthesis in genomic DNA of African trypanosomes.JBP1和JBP2是两种不同的胸苷羟化酶，参与非洲锥虫基因组DNA中J的生物合成。
Nucleic Acids Res. 2009 Apr;37(5):1452-62. doi: 10.1093/nar/gkn1067. Epub 2009 Jan 9.
10
The protein that binds to DNA base J in trypanosomatids has features of a thymidine hydroxylase.锥虫中与DNA碱基J结合的蛋白质具有胸苷羟化酶的特征。
Nucleic Acids Res. 2007;35(7):2107-15. doi: 10.1093/nar/gkm049. Epub 2007 Mar 27.

本文引用的文献

1
Formation of linear inverted repeat amplicons following targeting of an essential gene in Leishmania.利什曼原虫中一个必需基因被靶向作用后线性反向重复扩增子的形成。
Nucleic Acids Res. 2005 Mar 21;33(5):1699-709. doi: 10.1093/nar/gki304. Print 2005.
2
Regulation of trypanosome DNA glycosylation by a SWI2/SNF2-like protein.一种SWI2/SNF2样蛋白对锥虫DNA糖基化的调控
Mol Cell. 2005 Feb 4;17(3):441-51. doi: 10.1016/j.molcel.2004.12.022.
3
J-binding protein increases the level and retention of the unusual base J in trypanosome DNA.J结合蛋白可提高锥虫DNA中异常碱基J的水平及保留率。
Mol Microbiol. 2002 Oct;46(1):37-47. doi: 10.1046/j.1365-2958.2002.03144.x.
4
Site-specific interactions of JBP with base and sugar moieties in duplex J-DNA. Evidence for both major and minor groove contacts.JBP与双链J-DNA中碱基和糖基部分的位点特异性相互作用。存在大沟和小沟接触的证据。
J Biol Chem. 2002 Aug 2;277(31):28150-6. doi: 10.1074/jbc.M201487200. Epub 2002 May 23.
5
Recognition of base J in duplex DNA by J-binding protein.J结合蛋白对双链DNA中碱基J的识别。
J Biol Chem. 2002 Jan 11;277(2):958-66. doi: 10.1074/jbc.M109000200. Epub 2001 Nov 7.
6
Tandemly repeated DNA is a target for the partial replacement of thymine by beta-D-glucosyl-hydroxymethyluracil in Trypanosoma brucei.串联重复DNA是布氏锥虫中β-D-葡糖基羟甲基尿嘧啶部分取代胸腺嘧啶的靶点。
Mol Biochem Parasitol. 2000 Jul;109(2):133-45. doi: 10.1016/s0166-6851(00)00247-4.
7
Base J originally found in kinetoplastida is also a minor constituent of nuclear DNA of Euglena gracilis.最初在动质体中发现的碱基J也是纤细裸藻核DNA的次要成分。
Nucleic Acids Res. 2000 Aug 15;28(16):3017-21. doi: 10.1093/nar/28.16.3017.
8
The African trypanosome genome.
Int J Parasitol. 2000 Apr 10;30(4):329-45. doi: 10.1016/s0020-7519(00)00015-1.
9
The modified base J is the target for a novel DNA-binding protein in kinetoplastid protozoans.修饰碱基J是动质体原生动物中一种新型DNA结合蛋白的作用靶点。
EMBO J. 1999 Nov 15;18(22):6573-81. doi: 10.1093/emboj/18.22.6573.
10
Biosynthesis and function of the modified DNA base beta-D-glucosyl-hydroxymethyluracil in Trypanosoma brucei.布氏锥虫中修饰的DNA碱基β-D-葡萄糖基羟甲基尿嘧啶的生物合成与功能
Mol Cell Biol. 1998 Oct;18(10):5643-51. doi: 10.1128/MCB.18.10.5643.