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DNA微阵列开发的新方法:应用于人类血小板抗原多态性

New method for DNA microarrays development: applied to human platelet antigens polymorphisms.

作者信息

Brès J-C, Mérieux Y, Dugas V, Broutin J, Vnuk E, Jaber M, Rigal D, Martin J-R, Souteyrand E, Cabrera M, Cloarec J-P

机构信息

LEOM-UMR 5512, Ecole Centrale de Lyon, BP 163, 69131 Ecully Cedex, France.

出版信息

Biomed Microdevices. 2005 Jun;7(2):137-41. doi: 10.1007/s10544-005-1593-0.

DOI:10.1007/s10544-005-1593-0
PMID:15940428
Abstract

DNA microarrays are a powerful experimental tool for the detection of specific genomic sequences and are invaluable to a broad array of applications: clinical diagnosis, personalized medicine, drug research and development, gene therapy, food control technologies, and environmental sciences. Alloimmunization to human platelet antigens (HPAs) is commonly responsible for neonatal alloimmune thrombocytopenia, post-transfusional purpura and platelet transfusion refractoriness. Using DNA microarrays, we developed a diagnosis to type the biallelic HPA-1 platelet group. The region for the human genomic DNA sequence that contains the polymorphism responsible for HPA-1 alleles was amplified by polymerase chain reaction (PCR). The expected DNA fragments were hybridized on DNA microarrays, and the data were analyzed using specially developed software. Our initial results show that the two HPA-1 antigens polymorphisms containing a single base difference were detected using DNA microarrays.

摘要

DNA微阵列是用于检测特定基因组序列的强大实验工具,对广泛的应用领域都非常重要:临床诊断、个性化医疗、药物研发、基因治疗、食品控制技术和环境科学。对人类血小板抗原(HPA)的同种免疫通常是新生儿同种免疫性血小板减少症、输血后紫癜和血小板输注无效的原因。我们使用DNA微阵列开发了一种诊断方法,用于对双等位基因HPA-1血小板组进行分型。通过聚合酶链反应(PCR)扩增包含负责HPA-1等位基因多态性的人类基因组DNA序列区域。预期的DNA片段与DNA微阵列杂交,并使用专门开发的软件分析数据。我们的初步结果表明,使用DNA微阵列检测到了两个含有单个碱基差异的HPA-1抗原多态性。

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1
New method for DNA microarrays development: applied to human platelet antigens polymorphisms.DNA微阵列开发的新方法:应用于人类血小板抗原多态性
Biomed Microdevices. 2005 Jun;7(2):137-41. doi: 10.1007/s10544-005-1593-0.
2
Genotyping of Human Platelet Antigens by BeadChip Microarray Technology.利用微珠芯片微阵列技术对人类血小板抗原进行基因分型
Methods Mol Biol. 2015;1310:149-65. doi: 10.1007/978-1-4939-2690-9_13.
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Rapid genotyping of human platelet antigen 5 with fluorophore-labelled hybridization probes on the LightCycler.利用荧光团标记的杂交探针在LightCycler上对人类血小板抗原5进行快速基因分型。
Br J Haematol. 2001 Aug;114(2):397-9. doi: 10.1046/j.1365-2141.2001.02951.x.
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[Case report of a rare platelet-specific antigen HPA-10bw allele found in Chinese mainland].[中国大陆发现罕见血小板特异性抗原HPA - 10bw等位基因的病例报告]
Yi Chuan. 2007 Feb;29(2):177-9. doi: 10.1360/yc-007-0177.
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Human platelet alloantigens (HPAs): PCR-SSP genotyping of a UK population for 15 HPA alleles.人类血小板同种抗原(HPAs):英国人群15种HPA等位基因的聚合酶链反应-序列特异性引物基因分型
Eur J Immunogenet. 2003 Dec;30(6):415-9. doi: 10.1111/j.1365-2370.2003.00426.x.
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Genotyping for human platelet alloantigen polymorphisms: applications in the diagnosis of alloimmune platelet disorders.人类血小板同种抗原多态性的基因分型:在同种免疫性血小板疾病诊断中的应用
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Real-time PCR genotyping of human platelet alloantigens HPA-1, HPA-2, HPA-3 and HPA-5 is superior to the standard PCR-SSP method.人血小板同种抗原HPA-1、HPA-2、HPA-3和HPA-5的实时PCR基因分型优于标准PCR-SSP方法。
Transfus Med. 2004 Dec;14(6):425-32. doi: 10.1111/j.1365-3148.2004.00538.x.
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Mass-scale high-throughput multiplex polymerase chain reaction for human platelet antigen single-nucleotide polymorphisms screening of apheresis platelet donors.大规模高通量多重聚合酶链反应用于筛选单采血小板供者的人类血小板抗原单核苷酸多态性。
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Homogeneous and one-step fluorescent allele-specific PCR for SNP genotyping assays using conjugated polyelectrolytes.使用共轭聚电解质进行单核苷酸多态性基因分型测定的均相一步荧光等位基因特异性聚合酶链反应
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DNA microarrays.DNA微阵列
Adv Biochem Eng Biotechnol. 2008;109:433-53. doi: 10.1007/10_2007_087.

引用本文的文献

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Frequency of human platelet antigens in oncohematological patients with thrombocytopenia and the probability of incompatibility to platelet transfusions.肿瘤血液学血小板减少患者中人类血小板抗原的频率及血小板输注不相容的概率
Rev Bras Hematol Hemoter. 2012;34(3):202-5. doi: 10.5581/1516-8484.20120050.
2
Detection of blood-transmissible agents: can screening be miniaturized?血液传播病原体的检测:筛查能否微型化?
Transfusion. 2010 Sep;50(9):2032-45. doi: 10.1111/j.1537-2995.2010.02678.x.