Wu Di, Kofke David A
Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260-4200, USA.
J Chem Phys. 2005 May 22;122(20):204104. doi: 10.1063/1.1906209.
We present methods that introduce concepts from Rosenbluth sampling [M. N. Rosenbluth and A. W. Rosenbluth, J. Chem. Phys. 23, 356 (1955)] into the Jarzynski nonequilibrium work (NEW) free-energy calculation technique [C. Jarzynski, Phys. Rev. Lett. 78, 2690 (1997)]. The proposed hybrid modifies the way steps are taken in the NEW process. With it, each step is selected from a range of alternatives, with bias given to steps that contribute the least work. The definition of the work average is modified to account for the bias. We introduce two variants of this method, lambda-bias sampling and configuration-bias sampling, respectively; a combined lambda- and configuration-bias method is also considered. By reducing the likelihood that large nonequilibrated work values enter the ensemble average, the Rosenbluth sampling aids in remedying problems of inaccuracy of the calculation. We demonstrate the performance of the proposed methods through a model system of N independent harmonic oscillators. This model captures the difficulties involved in calculating free energies in real systems while retaining many tractable features that are helpful to the study. We examine four variants of this model that differ qualitatively in the nature of their phase-space overlap. Results indicate that the lambda-bias sampling method is most useful for systems with entropic sampling barriers, while the configuration-bias methods are best for systems with energetic sampling barriers. The Rosenbluth-sampling schemes yield much more accurate results than the unbiased nonequilibrium work method. Typically the accuracy can be improved by about an order of magnitude for a given amount of sampling; this improvement translates into two or more orders of magnitude less sampling required to obtain a given level of accuracy, owing to the generally slow convergence of the NEW calculation when the inaccuracy is large.
我们提出了一些方法,将罗森布鲁斯抽样法[M. N. 罗森布鲁斯和A. W. 罗森布鲁斯,《化学物理杂志》23, 356 (1955)]中的概念引入到雅尔津斯基非平衡功(NEW)自由能计算技术[C. 雅尔津斯基,《物理评论快报》78, 2690 (1997)]中。所提出的混合方法修改了NEW过程中采取步骤的方式。有了它,每个步骤都从一系列备选方案中选择,对做功最少的步骤给予偏向。功平均值的定义也进行了修改以考虑这种偏向。我们分别介绍了该方法的两种变体,即λ偏向抽样和构型偏向抽样;还考虑了一种λ和构型偏向相结合的方法。通过降低大的非平衡功值进入系综平均值的可能性,罗森布鲁斯抽样有助于纠正计算不准确的问题。我们通过一个由N个独立简谐振子组成的模型系统展示了所提出方法的性能。这个模型捕捉了实际系统中计算自由能所涉及的困难,同时保留了许多有助于研究的易于处理的特征。我们研究了该模型的四种变体,它们在相空间重叠的性质上有质的不同。结果表明,λ偏向抽样方法对具有熵抽样障碍的系统最有用,而构型偏向方法对具有能量抽样障碍的系统最适用。罗森布鲁斯抽样方案比无偏非平衡功方法产生的结果准确得多。通常,对于给定的采样量,精度可以提高大约一个数量级;由于当不准确程度较大时NEW计算的收敛通常较慢,这种改进意味着获得给定精度水平所需的采样量减少两个或更多数量级。