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适应极端环境:复杂系统中的大分子动力学

Adaptation to extreme environments: macromolecular dynamics in complex systems.

作者信息

Tehei Moeava, Zaccai Giuseppe

机构信息

INFM-OGG CRS-SOFT, c/o Institut Laue-Langevin, 6 rue Jules Horowitz BP 156, 38042 Grenoble Cedex 9, France.

出版信息

Biochim Biophys Acta. 2005 Aug 5;1724(3):404-10. doi: 10.1016/j.bbagen.2005.05.007.

Abstract

What we previously thought of as insurmountable physical and chemical barriers to life, we now see as yet another niche harbouring 'extremophiles'. Extremophiles and their macromolecules had to develop molecular mechanisms of adaptation to extreme physico-chemical conditions. Using neutron spectroscopy, we have demonstrated that molecular dynamics represents one of these molecular mechanisms of adaptation. To which extent do hyper-saline conditions and extreme temperatures influence molecular dynamics? First, molecular dynamics were analysed for halophilic malate dehydrogenase from Haloarcula marismortui (Hm MalDH) under different molar solvent salt concentration conditions influencing its stability. Secondly, mean macromolecular motions were measured in-vivo in psychrophile (Aquaspirillum arcticum), mesophile (Escherichia coli and Proteus mirabilis), thermophile (Thermus thermophilus), and hyperthermophile (Aquifex pyrofilus) bacteria. The mean constant force of Hm MalDH increases progessively with increasing stability. The results show that the molecular adaptation of Hm MalDH to hyper-saline conditions is achieved through an increasing resilience of its structure dominated by enthalpic mechanisms. The study of bacteria has provided tools to quantify the macromolecular adaptation to extreme temperatures in the naturally crowded environment of the cell. The macromolecular resilience of bacteria increases with adaptation to high temperatures.

摘要

我们以前认为是生命无法逾越的物理和化学障碍,现在却被视为另一个容纳“极端微生物”的生态位。极端微生物及其大分子必须发展出适应极端物理化学条件的分子机制。通过中子光谱学,我们已经证明分子动力学是这些适应分子机制之一。高盐条件和极端温度在多大程度上影响分子动力学?首先,在影响嗜盐苹果酸脱氢酶(来自死海嗜盐菌,即Hm MalDH)稳定性的不同摩尔溶剂盐浓度条件下,分析其分子动力学。其次,在嗜冷菌(北极水螺菌)、嗜温菌(大肠杆菌和奇异变形杆菌)、嗜热菌(嗜热栖热菌)和超嗜热菌(嗜热栖热菌)体内测量平均大分子运动。Hm MalDH的平均恒力随着稳定性的增加而逐渐增加。结果表明,Hm MalDH对高盐条件的分子适应是通过其结构以焓机制为主导的弹性增加来实现的。对细菌的研究提供了工具,以量化在细胞自然拥挤环境中大分子对极端温度的适应。细菌的大分子弹性随着对高温的适应而增加。

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