• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

适应性行走中平均步数的一个明显最小值。

A sharp minimum on the mean number of steps taken in adaptive walks.

作者信息

Rosenberg Noah A

机构信息

Department of Human Genetics and Bioinformatics Program, University of Michigan, 2017 Palmer Commons, Box 2218, 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218, USA.

出版信息

J Theor Biol. 2005 Nov 7;237(1):17-22. doi: 10.1016/j.jtbi.2005.03.026.

DOI:10.1016/j.jtbi.2005.03.026
PMID:15979094
Abstract

It was recently conjectured by H.A. Orr that from a random initial point on a random fitness landscape of alphabetic sequences with one-mutation adjacency, chosen from a larger class of landscapes, no adaptive algorithm can arrive at a local optimum in fewer than on average e-1 steps. Here, using an example in which the mean number of steps to a local optimum equals (A-1)/A, where A is the number of distinct "letters" in the "alphabet" from which sequences are constructed, it is shown that as originally stated, the conjecture does not hold. It is also demonstrated that (A-1)/A is a sharp minimum on the mean number of steps taken in adaptive walks on fitness landscapes of alphabetic sequences with one-mutation adjacency. As the example that achieves the new lower bound has properties that are not often considered as potential attributes for fitness landscapes-non-identically distributed fitnesses and negative fitness correlations for adjacent points-a weaker set of conditions characteristic of more commonly studied fitness landscapes is proposed under which the lower bound on the mean length of adaptive walks is conjectured to equal e-1.

摘要

最近,H.A. 奥尔猜想,从更大一类景观中选取的具有单突变邻接的字母序列随机适应度景观上的随机初始点出发,没有自适应算法能够在少于平均 (e - 1) 步的情况下达到局部最优。在此,通过一个例子表明,到局部最优的平均步数等于 ((A - 1)/A),其中 (A) 是构建序列所使用的“字母表”中不同“字母”的数量,结果表明,如最初所述,该猜想不成立。还证明了 ((A - 1)/A) 是具有单突变邻接的字母序列适应度景观上自适应行走所采取步数的均值的一个尖锐最小值。由于达到新下界的例子具有一些通常不被视为适应度景观潜在属性的特性——非均匀分布的适应度以及相邻点的负适应度相关性——因此提出了一组较弱的条件,这些条件是更常研究的适应度景观所特有的,据此推测自适应行走的平均长度下界等于 (e - 1)。

相似文献

1
A sharp minimum on the mean number of steps taken in adaptive walks.适应性行走中平均步数的一个明显最小值。
J Theor Biol. 2005 Nov 7;237(1):17-22. doi: 10.1016/j.jtbi.2005.03.026.
2
The population genetics of adaptation on correlated fitness landscapes: the block model.相关适应度景观上适应性的群体遗传学:模块模型。
Evolution. 2006 Jun;60(6):1113-24.
3
Towards a theory of evolutionary adaptation.迈向进化适应理论。
Genetica. 1998;102-103(1-6):525-33.
4
A minimum on the mean number of steps taken in adaptive walks.适应性行走中平均步数的最小值。
J Theor Biol. 2003 Jan 21;220(2):241-7. doi: 10.1006/jtbi.2003.3161.
5
Genealogical process on a correlated fitness landscape.相关适应度景观上的系谱过程。
J Exp Zool. 2002 Oct 15;294(3):274-84. doi: 10.1002/jez.10146.
6
Population evolution on a multiplicative single-peak fitness landscape.乘法单峰适应度景观上的种群进化
J Theor Biol. 1996 Mar 7;179(1):61-73. doi: 10.1006/jtbi.1996.0049.
7
Fluctuation domains in adaptive evolution.适应性进化中的波动域
Theor Popul Biol. 2010 Feb;77(1):6-13. doi: 10.1016/j.tpb.2009.10.003. Epub 2009 Oct 18.
8
Self-organization and competition in evolution: a conceptual problem in the use of fitness landscapes.进化中的自组织与竞争:适应度景观应用中的一个概念性问题。
J Theor Biol. 1996 Feb 21;178(4):369-73. doi: 10.1006/jtbi.1996.0032.
9
From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation.从适应度景观到海景:选择与适应的非平衡动力学
Trends Genet. 2009 Mar;25(3):111-9. doi: 10.1016/j.tig.2009.01.002. Epub 2009 Feb 18.
10
Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E.coli.从体外分子进化中提取适应度景观的特征性质:以fd噬菌体对大肠杆菌的感染性为例的研究。
J Theor Biol. 2007 Jun 7;246(3):538-50. doi: 10.1016/j.jtbi.2006.12.037. Epub 2007 Jan 20.

引用本文的文献

1
Exploiting the Adaptation Dynamics to Predict the Distribution of Beneficial Fitness Effects.利用适应动力学预测有益适合度效应的分布。
PLoS One. 2016 Mar 18;11(3):e0151795. doi: 10.1371/journal.pone.0151795. eCollection 2016.
2
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently.定向进化蛋白质生物催化剂的合成生物学:智能导航序列空间。
Chem Soc Rev. 2015 Mar 7;44(5):1172-239. doi: 10.1039/c4cs00351a.
3
Multiple adaptive substitutions during evolution in novel environments.
在新环境中的进化过程中出现了多种适应性替换。
Genetics. 2011 Nov;189(3):1029-43. doi: 10.1534/genetics.111.134163. Epub 2011 Sep 6.
4
The properties of adaptive walks in evolving populations of fungus.在真菌演化种群中的适应性游走的特性。
PLoS Biol. 2009 Nov;7(11):e1000250. doi: 10.1371/journal.pbio.1000250. Epub 2009 Nov 24.