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核小体DNA结构中的弹性相关性

Elastic correlations in nucleosomal DNA structure.

作者信息

Mohammad-Rafiee Farshid, Golestanian Ramin

机构信息

Isaac Newton Institute for Mathematical Sciences, Cambridge CB3 0EH, United Kingdom.

出版信息

Phys Rev Lett. 2005 Jun 17;94(23):238102. doi: 10.1103/PhysRevLett.94.238102. Epub 2005 Jun 15.

Abstract

The structure of DNA in the nucleosome core particle is studied using an elastic model that incorporates anisotropy in the bending energetics and twist-bend coupling. Using the experimentally determined structure of nucleosomal DNA [T. J. Richmond and C. A. Davey, Nature (London) 423, 145 (2003)], it is shown that elastic correlations exist between twist, roll, tilt, and stretching of DNA, as well as the distance between phosphate groups. The twist-bend coupling term is shown to be able to capture these correlations to a large extent, and a fit to the experimental data yields a new estimate of G = 25 nm for the value of the twist-bend coupling constant.

摘要

利用一种弹性模型研究核小体核心颗粒中DNA的结构,该模型在弯曲能量学和扭曲-弯曲耦合中纳入了各向异性。使用实验确定的核小体DNA结构[T. J. 里士满和C. A. 戴维,《自然》(伦敦)423, 145 (2003)],结果表明DNA的扭曲、滚动、倾斜和拉伸之间以及磷酸基团之间的距离存在弹性关联。扭曲-弯曲耦合项在很大程度上能够捕捉这些关联,对实验数据的拟合得出扭曲-弯曲耦合常数的值G = 25 nm的新估计。

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