Mathias Rasika A, Beaty Terri H, Bailey-Wilson Joan E, Bickel Carol, Stockton Maria L, Barnes Kathleen C
Department of Epidemiology, Bloomberg School of Hygiene and Public Health, Johns Hopkins University, Baltimore, MD 21224, USA.
Hum Hered. 2005;59(4):228-38. doi: 10.1159/000087123. Epub 2005 Jul 26.
This study was aimed at performing a segregation analysis of total serum immunoglobulin E (tIgE) in an isolated population using maximal genealogical information permitted by current software and computer capacities, while assessing the reliability of the best-fitting model of inheritance for tIgE through simulations.
All current Tangier Island, VA, residents (n = 664) belonged to one large extended pedigree (n = 3,501) spanning 13 generations, with an average inbreeding coefficient of 0.009. Phenotype data were obtained on 453 (68.2%) of the residents using a population-based recruitment scheme. Due to computational limitations resulting from the extremely complex pedigree structure, analysis on only two pedigree reconstructions was feasible: a reduced pedigree retaining all phenotyped individuals and their parents as 57 distinct families, and 922 nuclear families.
Familial correlations and heritability calculations reveal a significant genetic component to tIgE in these data (heritability = 26%). The most parsimonious model to explain tIgE distribution indicated by the reduced pedigree structure was a two-distribution Mendelian model. However, larger and non-genetic models could not be rejected. Simulations over 200 replicates performed to evaluate the reliability of this model, indicated that using restricted genealogical information had minimal impact on results of segregation analyses performed here.
本研究旨在利用当前软件和计算机能力所允许的最大谱系信息,对一个孤立人群的血清总免疫球蛋白E(tIgE)进行分离分析,同时通过模拟评估tIgE最佳拟合遗传模型的可靠性。
弗吉尼亚州丹吉尔岛目前的所有居民(n = 664)属于一个跨越13代的大型扩展家系(n = 3501),平均近亲繁殖系数为0.009。使用基于人群的招募方案,获得了453名(68.2%)居民的表型数据。由于极其复杂的谱系结构导致计算限制,仅对两个谱系重建进行分析是可行的:一个简化谱系保留所有表型个体及其父母作为57个不同的家庭,以及922个核心家庭。
家族相关性和遗传力计算表明,这些数据中tIgE存在显著的遗传成分(遗传力 = 26%)。简化谱系结构表明,解释tIgE分布的最简约模型是双分布孟德尔模型。然而,更大的非遗传模型不能被排除。通过200多次重复模拟来评估该模型的可靠性,结果表明使用有限的谱系信息对这里进行的分离分析结果影响最小。