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哺乳动物RNA聚合酶II催化机制的功能剖析

Functional dissection of the catalytic mechanism of mammalian RNA polymerase II.

作者信息

Coulombe Benoit, Langelier Marie-France

机构信息

Gene Transcription Laboratory, Institute de recherche cliniques de Montréal, QC, Canada.

出版信息

Biochem Cell Biol. 2005 Aug;83(4):497-504. doi: 10.1139/o05-061.

DOI:10.1139/o05-061
PMID:16094453
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4494827/
Abstract

High resolution X-ray crystal structures of multisubunit RNA polymerases (RNAP) have contributed to our understanding of transcriptional mechanisms. They also provided a powerful guide for the design of experiments aimed at further characterizing the molecular stages of the transcription reaction. Our laboratory used tandem-affinity peptide purification in native conditions to isolate human RNAP II variants that had site-specific mutations in structural elements located strategically within the enzyme's catalytic center. Both in vitro and in vivo analyses of these mutants revealed novel features of the catalytic mechanisms involving this enzyme.

摘要

多亚基RNA聚合酶(RNAP)的高分辨率X射线晶体结构有助于我们理解转录机制。它们还为旨在进一步表征转录反应分子阶段的实验设计提供了有力指导。我们实验室在天然条件下使用串联亲和肽纯化法,分离出在酶催化中心内战略性定位的结构元件中具有位点特异性突变的人RNAP II变体。对这些突变体的体外和体内分析揭示了涉及该酶的催化机制的新特征。

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Functional dissection of the catalytic mechanism of mammalian RNA polymerase II.哺乳动物RNA聚合酶II催化机制的功能剖析
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2
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引用本文的文献

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The RPB2 flap loop of human RNA polymerase II is dispensable for transcription initiation and elongation.人类 RNA 聚合酶 II 的 RPB2 叶环对于转录起始和延伸是可有可无的。
Mol Cell Biol. 2011 Aug;31(16):3312-25. doi: 10.1128/MCB.05318-11. Epub 2011 Jun 13.

本文引用的文献

1
The highly conserved glutamic acid 791 of Rpb2 is involved in the binding of NTP and Mg(B) in the active center of human RNA polymerase II.Rpb2中高度保守的谷氨酸791参与人RNA聚合酶II活性中心的NTP和Mg(B)结合。
Nucleic Acids Res. 2005 May 10;33(8):2629-39. doi: 10.1093/nar/gki570. Print 2005.
2
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS.完整的RNA聚合酶II延伸复合物结构及其与NTP和TFIIS的相互作用。
Mol Cell. 2004 Dec 22;16(6):955-65. doi: 10.1016/j.molcel.2004.11.040.
3
Structures of complete RNA polymerase II and its subcomplex, Rpb4/7.完整的RNA聚合酶II及其亚复合物Rpb4/7的结构
J Biol Chem. 2005 Feb 25;280(8):7131-4. doi: 10.1074/jbc.M413038200. Epub 2004 Dec 9.
4
Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center.转录的结构基础:RNA聚合酶II活性中心通过旋转进行核苷酸选择。
Cell. 2004 Nov 12;119(4):481-9. doi: 10.1016/j.cell.2004.10.016.
5
RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits.RPAP1,一种通过重组野生型和突变型聚合酶亚基亲和纯化得到的新型人类RNA聚合酶II相关蛋白。
Mol Cell Biol. 2004 Aug;24(16):7043-58. doi: 10.1128/MCB.24.16.7043-7058.2004.
6
Structural basis of transcription: separation of RNA from DNA by RNA polymerase II.转录的结构基础:RNA 聚合酶 II 使 RNA 与 DNA 分离
Science. 2004 Feb 13;303(5660):1014-6. doi: 10.1126/science.1090839.
7
Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms.转录的结构基础:4.5埃分辨率下的RNA聚合酶II-TFIIB共晶体结构
Science. 2004 Feb 13;303(5660):983-8. doi: 10.1126/science.1090838.
8
Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms.纯化的起始前复合物的光交联揭示了RNA聚合酶II移动夹和TFIIE在起始机制中的核心作用。
Mol Cell Biol. 2004 Feb;24(3):1122-31. doi: 10.1128/MCB.24.3.1122-1131.2004.
9
Donation of catalytic residues to RNA polymerase active center by transcription factor Gre.转录因子Gre向RNA聚合酶活性中心提供催化残基。
Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15469-74. doi: 10.1073/pnas.2536698100. Epub 2003 Dec 10.
10
Multiple sigma subunits and the partitioning of bacterial transcription space.多种σ亚基与细菌转录空间的划分
Annu Rev Microbiol. 2003;57:441-66. doi: 10.1146/annurev.micro.57.030502.090913.