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从头算分子动力学模拟水合质子的溶剂化与传输:再探讨

Ab initio molecular-dynamics simulation of aqueous proton solvation and transport revisited.

作者信息

Izvekov Sergei, Voth Gregory A

机构信息

Center for Biophysical Modeling and Simulation and Department of Chemistry, University of Utah, 315 S. 1400 E., Rm. 2020, Salt Lake City, Utah 84112-0850, USA.

出版信息

J Chem Phys. 2005 Jul 22;123(4):044505. doi: 10.1063/1.1961443.

Abstract

The solvation and transport of the hydrated excess proton is studied using the Car-Parrinello molecular-dynamics (CPMD) simulation method. The simulations were performed using BLYP and HCTH gradient-corrected exchange-correlation energy functionals. The fictitious electronic mass was chosen to be small enough so that the underlying water structural and dynamical properties were converged with respect to this important CPMD simulation parameter. An unphysical overstructuring of liquid water in the CPMD simulations using the BLYP functional resulted in the formation of long-lived hydrogen-bonding structures involving the excess proton and a particular (special) water oxygen. The excess proton was observed to be attracted to the special oxygen through the entire length of the BLYP CPMD simulations. Consequently, the excess proton diffusion was limited by the mobility of the special oxygen in the slowly diffusing water network and, in turn, the excess proton self-diffusion coefficient was found to be significantly below the experimental value. On the other hand, the structural properties of liquid water in the HCTH CPMD simulation were seen to be in better agreement with experiment, although the water and excess proton diffusions were still well below the experimental value.

摘要

采用Car-Parrinello分子动力学(CPMD)模拟方法研究了水合过量质子的溶剂化和输运。模拟使用BLYP和HCTH梯度校正交换相关能量泛函进行。选择足够小的虚拟电子质量,以使潜在的水结构和动力学性质相对于这个重要的CPMD模拟参数收敛。在使用BLYP泛函的CPMD模拟中,液态水出现非物理的过度结构化,导致形成涉及过量质子和特定(特殊)水氧的长寿命氢键结构。在整个BLYP CPMD模拟过程中,观察到过量质子被吸引到特殊氧上。因此,过量质子的扩散受到特殊氧在缓慢扩散水网络中迁移率的限制,相应地,发现过量质子的自扩散系数显著低于实验值。另一方面,尽管水和过量质子的扩散仍远低于实验值,但在HCTH CPMD模拟中液态水的结构性质与实验结果更吻合。

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