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脱辅基肌红蛋白构象转变时伴随的压缩性变化。

Compressibility changes accompanying conformational transitions of apomyoglobin.

作者信息

Taulier Nicolas, Beletskaya Irina V, Chalikian Tigran V

机构信息

Department of Pharmaceutical Sciences, Leslie Dan Facultyof Pharmacy, University of Toronto, 19 Russell Street, Toronto, Ontario M5S 2S2, Canada.

出版信息

Biopolymers. 2005 Nov;79(4):218-29. doi: 10.1002/bip.20350.

Abstract

We used high-precision density and ultrasonic velocity measurements to characterize the native (N), molten globule (MG), and unfolded (U) conformations of apomyoglobin. The molten globule states that were studied in this work include the MG(pH4)(NaCl) state observed at pH 4 and 20 mM NaCl, the MG(pH4)(NaTCA) state observed at pH 4 and 20 mM sodium trichloracetate (NaTCA), the MG(pH2)(NaCl) state observed at pH 2 and 200 mM NaCl, and the MG(pH2)(NaTCA) state observed at pH 2 and 20 mM NaTCA. We used our densimetric and acoustic data to evaluate changes in adiabatic compressibility associated with the acid- or salt-induced N-to-MG, MG-to-U, MG-to-MG, and U-to-MG transitions of the protein. The N-to-MG(pH4)(NaCl) and N-to-MG(pH4)(NaTCA) transitions are accompanied by decreases in compressibility of -(3.0 +/- 0.6) x 10(-6) and -(2.0 +/- 0.6) x 10(-6) cm3 g(-1)bar(-1), respectively. The N-to-MG(pH2)(NaCl) and N-to-MG(pH2)(NaTCA) transitions are associated with compressibility changes of -(4.9 +/- 1.1) x 10(-6) and (0.7 +/- 0.9) x 10(-6) cm3 g(-1) bar(-1), respectively. We interpret these data in terms of the degree of unfolding of the various molten globule forms of apomyoglobin. In general, our compressibility data reveal significant disparities between the various equilibrium molten globule states of apomyoglobin while also quantitatively characterizing each of these states. Volumetric insights provided by our data facilitate gaining a better understanding of the folding pathways, intermediates, and kinetics of apomyoglobin folding.

摘要

我们使用高精度密度和超声速度测量来表征脱辅基肌红蛋白的天然(N)、熔球态(MG)和去折叠(U)构象。本研究中所研究的熔球态包括在pH 4和20 mM氯化钠条件下观察到的MG(pH4)(NaCl)态、在pH 4和20 mM三氯乙酸钠(NaTCA)条件下观察到的MG(pH4)(NaTCA)态、在pH 2和200 mM氯化钠条件下观察到的MG(pH2)(NaCl)态以及在pH 2和20 mM NaTCA条件下观察到的MG(pH2)(NaTCA)态。我们利用密度测定和声学数据来评估与蛋白质酸诱导或盐诱导的N到MG、MG到U、MG到MG以及U到MG转变相关的绝热压缩率变化。N到MG(pH4)(NaCl)和N到MG(pH4)(NaTCA)转变分别伴随着压缩率降低-(3.0±0.6)×10⁻⁶和-(2.0±0.6)×10⁻⁶ cm³ g⁻¹ bar⁻¹。N到MG(pH2)(NaCl)和N到MG(pH2)(NaTCA)转变分别与压缩率变化-(4.9±1.1)×10⁻⁶和(0.7±0.9)×10⁻⁶ cm³ g⁻¹ bar⁻¹相关。我们根据脱辅基肌红蛋白各种熔球态的去折叠程度来解释这些数据。总体而言,我们的压缩率数据揭示了脱辅基肌红蛋白各种平衡熔球态之间的显著差异,同时也对每种状态进行了定量表征。我们的数据所提供的体积见解有助于更好地理解脱辅基肌红蛋白折叠的途径、中间体和动力学。

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