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通过基于氙的核磁共振光谱法探究假野生型噬菌体T4溶菌酶疏水腔内氙结合的动力学。

Dynamics of xenon binding inside the hydrophobic cavity of pseudo-wild-type bacteriophage T4 lysozyme explored through xenon-based NMR spectroscopy.

作者信息

Desvaux Hervé, Dubois Lionel, Huber Gaspard, Quillin Michael L, Berthault Patrick, Matthews Brian W

机构信息

Laboratoire Structure et Dynamique par Résonance Magnétique, DSM/DRECAM/Service de Chimie Moléculaire, URA CEA/CNRS 331, CEA Saclay, F-91191 Gif sur Yvette, France.

出版信息

J Am Chem Soc. 2005 Aug 24;127(33):11676-83. doi: 10.1021/ja053074p.

Abstract

Wild-type bacteriophage T4 lysozyme contains a hydrophobic cavity with binding properties that have been extensively studied by X-ray crystallography and NMR. In the present study, the monitoring of 1H chemical shift variations under xenon pressure enables the determination of the noble gas binding constant (K = 60.2 M(-1)). Although the interaction site is highly localized, dipolar cross-relaxation effects between laser-polarized xenon and nearby protons (SPINOE) are rather poor. This is explained by the high value of the xenon-proton dipolar correlation time (0.8 ns), much longer than the previously reported values for xenon in medium-size proteins. This indicates that xenon is highly localized within the protein cavity, as confirmed by the large chemical shift difference between free and bound xenon. The exploitation of the xenon line width variation vs xenon pressure and protein concentration allows the extraction of the exchange correlation time between free and bound xenon. Comparison to the exchange experienced by protein protons indicates that the exchange between the open and closed conformations of T4 lysozyme is not required for xenon binding.

摘要

野生型噬菌体T4溶菌酶含有一个疏水腔,其结合特性已通过X射线晶体学和核磁共振进行了广泛研究。在本研究中,通过监测氙气压力下的1H化学位移变化,可以确定稀有气体结合常数(K = 60.2 M(-1))。尽管相互作用位点高度局部化,但激光极化氙与附近质子之间的偶极交叉弛豫效应(SPINOE)相当弱。这可以通过氙-质子偶极相关时间的值较高(0.8 ns)来解释,该值远长于先前报道的中等大小蛋白质中氙的相关时间值。这表明氙在蛋白质腔内高度局部化,游离氙和结合氙之间的大化学位移差异证实了这一点。利用氙线宽随氙气压力和蛋白质浓度的变化,可以提取游离氙和结合氙之间的交换相关时间。与蛋白质质子经历的交换相比,这表明T4溶菌酶开放和闭合构象之间的交换对于氙的结合不是必需的。

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