Suppr超能文献

通过分子动力学模拟研究液晶形成分子与磷脂双层的相互作用。

Interactions of liquid crystal-forming molecules with phospholipid bilayers studied by molecular dynamics simulations.

作者信息

Kim Evelina B, Lockwood Nathan, Chopra Manan, Guzmán Orlando, Abbott Nicholas L, de Pablo Juan J

机构信息

Department of Chemical Engineering, University of Wisconsin, Madison, WI 53706, USA.

出版信息

Biophys J. 2005 Nov;89(5):3141-58. doi: 10.1529/biophysj.105.065193. Epub 2005 Aug 19.

Abstract

Recent experiments have shown that liquid crystals can be used to image mammalian cell membranes and to amplify structural reorganization in phospholipid-laden liquid crystal-aqueous interfaces. In this work, molecular dynamics simulations were employed to explore the interactions between commonly used liquid crystal-forming molecules and phospholipid bilayers. In particular, umbrella sampling was used to obtain the potential of mean force of 4-cyano-4'-pentylbiphenyl (5CB) and 4'-(3,4-difluor-phenyl)-4-pentyl-bicylohexyl (5CF) molecules partitioning into a dipalmitoylphosphatidylcholine bilayer. In addition, results of simulations are presented for systems consisting of a fully hydrated bilayer with 5CB or 5CF molecules at the lowest (4.5 mol %) and highest (20 mol %) concentrations used in recent laboratory experiments. It is found that mesogens preferentially partition from the aqueous phase into the membrane; the potential of mean force exhibits highly favorable free energy differences for partitioning (-18 k(B)T for 5CB and -26 k(B)T for 5CF). The location and orientation of mesogens associated with the most stable free energies in umbrella sampling simulations of dilute systems were found to be consistent with those observed in liquid-crystal-rich bilayers. It is found that the presence of mesogens in the bilayer enhances the order of lipid acyl tails, and changes the spatial and orientational arrangement of lipid headgroup atoms. These effects are more pronounced at higher liquid-crystal concentrations. In comparing the behavior of 5CB and 5CF, a stronger spatial correlation (i.e., possibly leading to aggregation) is observed between 5CB molecules within a bilayer than between 5CF molecules. Also, the range of molecular orientations and positions along the bilayer normal is larger for 5CB molecules. At the same time, 5CF molecules were found to bind more strongly to lipid headgroups, thereby slowing the lateral motion of lipid molecules.

摘要

近期实验表明,液晶可用于对哺乳动物细胞膜进行成像,并放大富含磷脂的液晶 - 水界面中的结构重组。在这项工作中,采用分子动力学模拟来探索常用的液晶形成分子与磷脂双层之间的相互作用。特别地,使用伞形抽样来获得4 - 氰基 - 4'- 戊基联苯(5CB)和4' - (3,4 - 二氟苯基) - 4 - 戊基 - 双环己基(5CF)分子分配到二棕榈酰磷脂酰胆碱双层中的平均力势。此外,还给出了在近期实验室实验中使用的最低(4.5摩尔%)和最高(20摩尔%)浓度下,由含有5CB或5CF分子的完全水合双层组成的系统的模拟结果。研究发现,液晶元优先从水相分配到膜中;平均力势在分配时表现出非常有利的自由能差(5CB为 - 18k(B)T,5CF为 - 26k(B)T)。在稀溶液系统的伞形抽样模拟中,与最稳定自由能相关的液晶元的位置和取向与在富含液晶的双层中观察到的一致。研究发现,双层中液晶元的存在增强了脂质酰基尾部的有序性,并改变了脂质头部基团原子的空间和取向排列。这些效应在较高液晶浓度下更为明显。在比较5CB和5CF的行为时,观察到双层内5CB分子之间的空间相关性比5CF分子之间更强(即可能导致聚集)。此外,5CB分子沿双层法线方向的分子取向和位置范围更大。同时,发现5CF分子与脂质头部基团结合更强,从而减缓了脂质分子的横向运动。

相似文献

1
Interactions of liquid crystal-forming molecules with phospholipid bilayers studied by molecular dynamics simulations.
Biophys J. 2005 Nov;89(5):3141-58. doi: 10.1529/biophysj.105.065193. Epub 2005 Aug 19.
2
Molecular characterization of gel and liquid-crystalline structures of fully hydrated POPC and POPE bilayers.
J Phys Chem B. 2007 May 31;111(21):6026-33. doi: 10.1021/jp0686339. Epub 2007 May 9.
3
Molecular simulation study of structural and dynamic properties of mixed DPPC/DPPE bilayers.
Biophys J. 2006 Jun 1;90(11):3951-65. doi: 10.1529/biophysj.105.076596. Epub 2006 Mar 13.
4
Molecular dynamics simulations of unsaturated lipid bilayers: effects of varying the numbers of double bonds.
Eur Biophys J. 2005 Jun;34(4):294-305. doi: 10.1007/s00249-004-0455-7. Epub 2005 Feb 2.
6
Structure and dynamics of water at the interface with phospholipid bilayers.
J Chem Phys. 2005 Dec 8;123(22):224702. doi: 10.1063/1.2132277.
7
Molecular studies of the gel to liquid-crystalline phase transition for fully hydrated DPPC and DPPE bilayers.
Biochim Biophys Acta. 2007 Feb;1768(2):354-65. doi: 10.1016/j.bbamem.2006.11.003. Epub 2006 Nov 11.
8
Doping the nematic liquid crystal 5CB with milled BaTiO3 nanoparticles.
Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Nov;86(5 Pt 1):051704. doi: 10.1103/PhysRevE.86.051704. Epub 2012 Nov 20.
10

引用本文的文献

1
Molecular-scale substrate anisotropy, crowding and division drive collective behaviours in cell monolayers.
J R Soc Interface. 2023 Jul;20(204):20230160. doi: 10.1098/rsif.2023.0160. Epub 2023 Jul 5.
2
Real-Time Imaging of Ammonia Release from Single Live Cells via Liquid Crystal Droplets Immobilized on the Cell Membrane.
Adv Sci (Weinh). 2019 Aug 24;6(20):1900778. doi: 10.1002/advs.201900778. eCollection 2019 Oct 16.
3
Tunable Gas Sensing Gels by Cooperative Assembly.
Adv Funct Mater. 2017 Jul 19;27(27). doi: 10.1002/adfm.201700803.

本文引用的文献

1
Effect of cholesterol on the properties of phospholipid membranes. 4. Interatomic voids.
J Phys Chem B. 2005 Sep 1;109(34):16490-502. doi: 10.1021/jp051832s.
2
Molecular dynamics simulation study of the interaction of trehalose with lipid membranes.
Langmuir. 2004 Aug 31;20(18):7844-51. doi: 10.1021/la049485l.
5
Distribution of pentachlorophenol in phospholipid bilayers: a molecular dynamics study.
Biophys J. 2004 Jan;86(1 Pt 1):337-45. doi: 10.1016/S0006-3495(04)74109-0.
6
Biomolecular interactions at phospholipid-decorated surfaces of liquid crystals.
Science. 2003 Dec 19;302(5653):2094-7. doi: 10.1126/science.1091749.
8
Molecular simulation study of phospholipid bilayers and insights of the interactions with disaccharides.
Biophys J. 2003 Nov;85(5):2830-44. doi: 10.1016/s0006-3495(03)74706-7.
9
Parametrization and validation of a force field for liquid-crystal forming molecules.
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 May;65(5 Pt 1):051709. doi: 10.1103/PhysRevE.65.051709. Epub 2002 May 21.
10
Microscopic structure and dynamics of a partial bilayer smectic liquid crystal.
Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Nov;64(5 Pt 1):051703. doi: 10.1103/PhysRevE.64.051703. Epub 2001 Oct 16.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验