Alinchenko Marina G, Voloshin Vladimir P, Medvedev Nikolai N, Mezei Mihaly, Pártay Lívia, Jedlovszky Pal
Institute of Chemical Kinetics and Combustion, Siberian Branch of the RAS, Group of Supramolecular Structures, Institutskaya 3, R-630090 Novosibirsk, Russia.
J Phys Chem B. 2005 Sep 1;109(34):16490-502. doi: 10.1021/jp051832s.
The properties of the interatomic voids present in fully hydrated dimyristoylphosphatidylcholine (DMPC)-cholesterol mixed membranes of different compositions are analyzed in detail using a generalized variant of the Voronoi-Delaunay method on the basis of computer simulation results. The systems investigated are chosen from both sides of the DMPC-cholesterol miscibility gap; the pure DMPC bilayer has also been included in the analysis as a reference system. The results obtained show that the empty space is organized in a more compact way, forming larger voids in the presence than in the absence of cholesterol. The voids located in the region of the rigid cholesterol rings become, on average, less spherical, oriented more parallel with the membrane normal axis with increasing cholesterol concentration, whereas an opposite effect of cholesterol is observed in the middle of the membrane among the chain terminal methyl groups. In general, the preferential orientation of the voids is found to strongly correlate with that of the molecules in the hydrocarbon phase of the membranes. The membranes are found to contain rather large voids, the volume of which can be an order of magnitude larger than the largest spherical cavities present in the systems. These voids are elongated or branching channels rather than big empty holes. The voids located among the DMPC and cholesterol molecules are lying preferably parallel with the membrane normal axis. The existence of such empty channels can be of great importance in the cross-membrane permeation of small, uncharged penetrants, in particular, of polar molecules.
基于计算机模拟结果,使用Voronoi-Delaunay方法的广义变体,详细分析了不同组成的完全水合二肉豆蔻酰磷脂酰胆碱(DMPC)-胆固醇混合膜中存在的原子间空隙的性质。所研究的系统选自DMPC-胆固醇混溶间隙的两侧;纯DMPC双层也作为参考系统纳入分析。获得的结果表明,空隙以更紧凑的方式组织,与不存在胆固醇时相比,存在胆固醇时形成更大的空隙。位于刚性胆固醇环区域的空隙平均变得不那么呈球形,随着胆固醇浓度的增加,其与膜法线轴的取向更平行,而在膜中间链端甲基之间观察到胆固醇的相反作用。一般来说,发现空隙的优先取向与膜烃相中的分子取向密切相关。发现膜中含有相当大的空隙,其体积可能比系统中存在的最大球形腔大一个数量级。这些空隙是细长的或分支的通道,而不是大的空洞。位于DMPC和胆固醇分子之间的空隙优选与膜法线轴平行排列。这种空通道的存在对于小的不带电渗透物,特别是极性分子的跨膜渗透可能非常重要。